Hg_chrom5_TN10mRNA_9822
Organism: Heterodera glycines Gene Locus: chr5:4657016-4658306 Feature type: polypeptideProtein Sequence
Length: 317
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.88 | 1.1 | 1.319 | 0.653 | 1.209 | 1.213 | 0.563 | 0.473 | 1.262 | 1.279 | 1.243 | 0.557 | 1.49 | 0.607 | 1.288 | 1.172 | 0.983 | 0.908 | 0.485 | 0.278 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9239
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.486
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
VKKSSKKGRRK,KKNSIQTNLEEKIKQERR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.845
|
0.087
|
0.003
|
0.204
|
0.013
|
0.007
|
0.053
|
0.010
|
0.021
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q96GQ7.2 Probable ATP-dependent RNA helicase DDX27 [Homo sapiens]
|
KAI6178057.1 DEAD box polypeptide 27 [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003724|GO:0005524
|
GO:0005575_0.895|GO:0110165_0.895|GO:0005622_0.832|GO:0008150_0.743|GO:0043226_0.700|GO:0043229_0.681|GO:0009987_0.651|GO:0016020_0.651|GO:0003674_0.608|GO:0005737_0.593|GO:0043227_0.513|GO:0043231_0.503
|
IPR011545+219-301+|IPR014001+226-317+|IPR014014+195-223+|IPR027417+142-307_193-303+|IPR050079+160-303+
|
— |
PF00270+219-301+DEAD/DEAH_box_helicase
|
— |
PTHR47959+160-303+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-317
|
4brw_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.648
|
35545.330
|
7.154
|
1.500
|
29.968
|
7.886
|
53.628
|
46.372
|
15.457
|
14.511
|
49.527
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
578.930
|
938.452
|
776.399
|
599.446
|
610.941
|
577.857
|
507.579
|
447.048
|
1137.898
|
7.749
|
492.098
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.503
|
-0.784
|
-0.265
|
— | — | — |
-0.476
|
0.326
|
6.800
|
— |
6.210
|
— | — |
No JSON data available for plots.