SCN Proteipedia

Hg_chrom5_TN10mRNA_9823

Organism: Heterodera glycines Gene Locus: chr5:4658490-4660094 Feature type: polypeptide

Protein Sequence

Length: 305

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.648	0.839	1.013	0.452	0.929	1.009	0.82	1.803	2.113	1.551	0.845	1.736	0.911	0.631	1.472	0.609	1.075	0.845	0.757	0.964	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9240	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRLRI	—	—	—	—	—	—	0.000	—	—	0.798	0.156	0.016	0.472	0.093	0.067	0.040	0.049	0.109	0.030

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009481	1.000	1.000	Hsc_gene_20253.t1	Hsc_gene_20253.t1;Hsc_gene_20253.t2	—	G5EFV5.1 Cyclin-dependent kinase 7 [Caenorhabditis elegans]	KAF7636171.1 Protein kinase domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0005675\|GO:0006468\|GO:0008353\|GO:0070985	GO:0008150_0.912\|GO:0009987_0.870\|GO:0005575_0.827\|GO:0110165_0.810\|GO:0065007_0.791\|GO:0050789_0.784\|GO:0003674_0.774\|GO:0003824_0.774\|GO:0016740_0.774\|GO:0050794_0.756\|GO:0016772_0.753\|GO:0140096_0.751\|GO:0016773_0.738\|GO:0016301_0.734\|GO:0004672_0.731\|GO:0005622_0.723\|GO:0016020_0.624\|GO:0007049_0.589\|GO:0004674_0.576\|GO:0050896_0.565\|GO:0043226_0.546\|GO:0043227_0.531\|GO:0051726_0.526\|GO:0043229_0.523\|GO:0008152_0.519\|GO:0044238_0.511\|GO:0005488_0.507\|GO:0005515_0.507\|GO:0005737_0.503\|GO:0051716_0.503	IPR000719+11-244_11-286_11-305+\|IPR008271+132-144+\|IPR011009+8-269+\|IPR017441+17-41+\|IPR037770+10-278+\|IPR050108+10-264+	SM00220+11-286+	PF00069+11-244+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000624+93-289+Mitogen-activated_protein_kinase\|G3DSA:3.30.200.20:FF:000190+1-94+Putative_cyclin-dependent_kinase_7	PTHR24056+10-264+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-1	1.000	2-305	8p7l_J	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.661	34800.460	9.005	10.500	27.541	11.148	45.902	54.098	16.393	11.148	42.623

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1406.887	2117.173	1267.956	1202.780	1177.470	1112.659	995.492	1464.441	948.488	1942.026	1516.224

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.969	-0.953	—	—	—	—	0.292	-0.417	—	—	—	—	—

No JSON data available for plots.

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