Hg_chrom5_TN10mRNA_9825
Organism: Heterodera glycines Gene Locus: chr5:4663011-4666220 Feature type: polypeptideProtein Sequence
Length: 386
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.994 | 1.807 | 0.942 | 0.268 | 0.691 | 1.794 | 0.586 | 1.295 | 0.748 | 1.015 | 0.864 | 1.524 | 0.864 | 1.345 | 1.11 | 1.665 | 0.934 | 0.824 | 0.399 | 0.305 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9242
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RLSKRKM,KRLVNQHIFHRLKYK
|
51-76
|
0.989
|
— | — | — | — |
0.000
|
— | — |
0.239
|
0.197
|
0.007
|
0.769
|
0.109
|
0.279
|
0.243
|
0.033
|
0.280
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009483
|
1.000
|
1.000
|
Hsc_gene_20255.t3
|
Hsc_gene_20255.t1;Hsc_gene_20255.t2;Hsc_gene_20255.t3;Hsc_gene_20258.t1
|
— |
P70429.2 Ena/VASP-like protein [Mus musculus]
|
KAF7636168.1 WH1 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.930|GO:0110165_0.927|GO:0005622_0.880|GO:0016020_0.850|GO:0008150_0.849|GO:0009987_0.808|GO:0005737_0.731|GO:0071840_0.691|GO:0016043_0.690|GO:0043226_0.683|GO:0043229_0.683|GO:0003674_0.656|GO:0005488_0.647|GO:0065007_0.626|GO:0050789_0.623|GO:0006996_0.621|GO:0050794_0.609|GO:0005515_0.597|GO:0007010_0.597|GO:0071944_0.589|GO:0030029_0.586|GO:0030036_0.586|GO:0005886_0.575|GO:0048518_0.527|GO:0005829_0.522|GO:0048522_0.519|GO:0032501_0.513|GO:0030054_0.512
|
IPR000697+1-116_1-119_32-115+|IPR011993+1-126+
|
SM00461+1-116+
|
PF00568+32-115+WH1_domain
|
— |
PTHR11202+1-142+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
112-386
|
1.000
|
1-111
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.958
|
42181.100
|
9.766
|
12.000
|
23.057
|
7.254
|
55.181
|
44.819
|
13.731
|
9.326
|
56.995
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightcyan
|
1098.844
|
1303.234
|
1123.189
|
944.878
|
889.028
|
946.981
|
827.580
|
1249.484
|
576.101
|
1643.729
|
1186.174
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.444
|
-0.601
|
-0.141
|
-0.120
|
— | — |
0.294
|
-0.453
|
— | — | — | — | — |
No JSON data available for plots.