Hg_chrom5_TN10mRNA_9826
Organism: Heterodera glycines Gene Locus: chr5:4667586-4669187 Feature type: polypeptideProtein Sequence
Length: 274
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.4 | 0.594 | 0.796 | 0.0 | 1.217 | 1.684 | 0.695 | 0.912 | 1.703 | 1.43 | 0.719 | 1.288 | 1.014 | 0.772 | 1.117 | 0.834 | 0.957 | 1.106 | 0.281 | 0.537 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9243
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain|mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.011
|
— | — |
0.091
|
0.875
|
0.036
|
0.197
|
0.168
|
0.108
|
0.229
|
0.017
|
0.075
|
0.119
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009484
|
1.000
|
1.000
|
Hsc_gene_20256.t1
|
Hsc_gene_20256.t1
|
— |
Q9BKU4.1 Mitochondrial prohibitin complex protein 1 [Caenorhabditis elegans]
|
KAI6225060.1 Prohibitin [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.914|GO:0110165_0.910|GO:0005622_0.842|GO:0016020_0.825|GO:0005737_0.817|GO:0043226_0.764|GO:0043229_0.744|GO:0043227_0.715|GO:0043231_0.692|GO:0008150_0.688|GO:0009987_0.637|GO:0005739_0.545
|
IPR000163+6-265_29-222_72-88_90-109_113-131_136-152_159-178_184-207_207-223+|IPR001107+28-189_31-207+|IPR036013+57-191_60-196+
|
SM00244+28-189+
|
PF01145+31-207+SPFH_domain_/_Band_7_family
|
G3DSA:3.30.479.30:FF:000001+57-191+Prohibitin_2
|
PTHR23222+6-265+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-274
|
9o6t_X
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.550
|
30020.530
|
6.038
|
-1.500
|
23.723
|
7.664
|
44.526
|
55.474
|
12.044
|
11.679
|
47.810
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
2328.513
|
967.053
|
1472.690
|
3764.187
|
3906.743
|
2520.428
|
2045.726
|
1205.025
|
1454.241
|
3140.870
|
2418.029
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.378
|
1.824
|
1.462
|
— |
-0.617
|
-0.291
|
-1.168
|
0.905
|
— | — | — | — | — |
No JSON data available for plots.