SCN Proteipedia

Hg_chrom5_TN10mRNA_9827

Organism: Heterodera glycines Gene Locus: chr5:4669647-4671831 Feature type: polypeptide

Protein Sequence

Length: 467

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.071	0.996	1.129	1.108	0.857	0.933	1.096	1.178	1.142	1.244	0.616	2.519	1.249	0.577	1.093	0.765	1.053	1.071	0.329	0.567	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9244	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	22-J4_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	FKRR	—	—	—	—	—	—	0.000	—	—	0.506	0.391	0.010	0.750	0.095	0.258	0.141	0.022	0.277	0.068

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004098	1.000	2.000	Hsc_gene_12628.t1;Hsc_gene_20257.t1	Hsc_gene_12628.t1;Hsc_gene_13251.t1;Hsc_gene_13252.t1;Hsc_gene_13256.t1;Hsc_gene_1394.t1;Hsc_gene_17662.t1;Hsc_gene_17787.t1;Hsc_gene_20257.t1;Hsc_gene_20447.t1;Hsc_gene_2311.t1;Hsc_gene_4063.t1	—	Q1W674.1 Hexokinase-2 [Sus scrofa]	KAF7630760.1 Phosphotransferase [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0001678\|GO:0004396\|GO:0005524\|GO:0005536\|GO:0005975\|GO:0006096\|GO:0016773	GO:0008150_0.887\|GO:0005575_0.842\|GO:0110165_0.808\|GO:0003674_0.756\|GO:0009987_0.755\|GO:0008152_0.694\|GO:0003824_0.663\|GO:0005622_0.663\|GO:0044238_0.661\|GO:0005737_0.654\|GO:0016020_0.645\|GO:0044237_0.636\|GO:0005975_0.584\|GO:0016740_0.577\|GO:0006793_0.571\|GO:0006796_0.571\|GO:0043226_0.558\|GO:0016310_0.545\|GO:0043229_0.545\|GO:0046835_0.540\|GO:0016772_0.537\|GO:0016301_0.531\|GO:0016773_0.530\|GO:0043227_0.530\|GO:0004396_0.524\|GO:0019200_0.524\|GO:1901135_0.522\|GO:0043231_0.517\|GO:0019637_0.507	IPR001312+6-459_7-456+\|IPR019807+140-165+\|IPR022672+12-208+\|IPR022673+216-457+\|IPR043129+11-210_214-461+	—	PF00349+12-208+Hexokinase\|PF03727+216-457+Hexokinase	G3DSA:3.30.420.40:FF:000095+57-218+Phosphotransferase\|G3DSA:3.40.367.20:FF:000005+193-444+Phosphotransferase	PTHR19443+6-459+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-4	1.000	5-467	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.548	50798.270	5.968	-3.500	23.126	9.208	42.827	57.173	11.777	11.349	53.961

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	black	2266.564	50.069	112.548	259.665	743.811	6021.456	384.086	6652.288	8.223	4576.077	2618.425

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.935	2.237	1.318	1.488	3.031	-3.961	—	-3.967	-9.208	—	—	—	—

No JSON data available for plots.

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