Hg_chrom5_TN10mRNA_9829
Organism: Heterodera glycines Gene Locus: chr5:4673777-4695645 Feature type: polypeptideProtein Sequence
Length: 4,390
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.837 | 1.033 | 0.758 | 0.856 | 0.786 | 1.314 | 0.814 | 1.355 | 1.073 | 1.25 | 0.607 | 1.26 | 0.899 | 1.192 | 1.325 | 1.787 | 0.986 | 0.739 | 0.578 | 0.596 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9246
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|cell_membrane
|
— |
RRTIKLIRERKRKLF,RRKSFVSMQLYRKSKL,RRILLECDAERKKGDK,RKRLGTDTSSGSSKSKKT,KRVHIRRSSSVEIPRPKRF,KRFSSGAKELRKERNRKRL,RKTSTNPRTNSQTDRQGRR,IRRSSSVEIPRPKRFSSGAKELRKERNRKR
|
29-54
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.191
|
0.349
|
0.034
|
0.615
|
0.239
|
0.451
|
0.313
|
0.063
|
0.582
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004099
|
1.000
|
2.000
|
Hsc_gene_20259.t1;Hsc_gene_20259.t2
|
Hsc_gene_20259.t1;Hsc_gene_20259.t2
|
— |
G5EFI8.1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1 [Caenorhabditis elegans]
|
KAH7728442.1 Protein PLC-1 d [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004435|GO:0005085|GO:0005515|GO:0006629|GO:0007165|GO:0007264|GO:0008081|GO:0035556
|
GO:0008150_0.891|GO:0005575_0.878|GO:0110165_0.873|GO:0009987_0.830|GO:0065007_0.792|GO:0003674_0.764|GO:0050789_0.760|GO:0050794_0.726|GO:0005622_0.712|GO:0050896_0.680|GO:0005488_0.609|GO:0003824_0.553|GO:0016020_0.551|GO:0005515_0.550|GO:0016787_0.534|GO:0016788_0.511
|
IPR000008+3726-3853_3744-3845_3745-3818+|IPR000159+3940-4069_4169-4280_4175-4280+|IPR000909+3086-3234_3089-3235+|IPR001192+2890-3464_3091-3109_3117-3137_3218-3235_3655-3676_3831-3841+|IPR001711+3601-3720_3619-3717_3619-3719+|IPR001895+2067-2405_2071-2357_2074-2270+|IPR002110+194-223_194-226_272-301_272-304_272-337_305-336_305-339+|IPR011992+2893-3081+|IPR015359+3014-3071+|IPR017946+3085-3478_3088-3465_3571-3734_3615-3721+|IPR019748+1707-1902_1717-1747+|IPR019749+1642-1902+|IPR023578+1851-2334+|IPR029071+3937-4068_4166-4285+|IPR035892+3739-3882_3744-3863+|IPR035963+1707-1754+|IPR036770+77-269_193-351_270-367+|IPR036964+2067-2347+
|
SM00147+2067-2405+|SM00148+3086-3234+|SM00149+3601-3720+|SM00239+3744-3845+|SM00248+194-223_272-301_305-336+|SM00295+1642-1902+|SM00314+3940-4069_4169-4280+
|
PF00168+3745-3818+C2_domain|PF00373+1707-1902+FERM_central_domain|PF00387+3619-3717+Phosphatidylinositol-specific_phospholipase_C,_Y_domain|PF00388+3089-3235+Phosphatidylinositol-specific_phospholipase_C,_X_domain|PF00617+2074-2270+RasGEF_domain|PF09279+3014-3071+Phosphoinositide-specific_phospholipase_C,_efhand-like|PF12796+272-337+Ankyrin_repeats_(3_copies)
|
G3DSA:2.60.40.150:FF:000183+3740-3883+Phosphoinositide_phospholipase_C
|
PTHR10336+2890-3464+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-197;370-502;939-1086;1221-1489;2346-2431;2689-2890;3280-3623;4070-4177;4363-4390
|
8.000
|
198-369;503-938;1087-1220;1490-2345;2432-2688;2891-3279;3624-4069;4178-4362
|
9b13_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.939
|
479055.440
|
8.688
|
130.500
|
22.096
|
8.724
|
50.182
|
49.818
|
13.212
|
8.884
|
54.715
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
greenyellow
|
1662.881
|
1413.931
|
4173.543
|
1828.544
|
595.965
|
573.245
|
1001.669
|
1304.577
|
313.880
|
2955.392
|
1823.315
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.332
|
0.234
|
-1.082
|
-1.648
|
— |
0.817
|
1.086
|
— |
-3.353
|
— | — | — | — |
No JSON data available for plots.