Hg_chrom5_TN10mRNA_9830
Organism: Heterodera glycines Gene Locus: chr5:4696646-4700825 Feature type: polypeptideProtein Sequence
Length: 663
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.474 | 1.228 | 1.207 | 0.78 | 1.76 | 1.547 | 0.557 | 1.433 | 1.173 | 0.938 | 0.983 | 1.863 | 1.341 | 0.725 | 1.262 | 1.034 | 0.816 | 0.708 | 1.16 | 0.754 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9247
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.852
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — |
36-56
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.600
|
0.132
|
0.013
|
0.608
|
0.096
|
0.132
|
0.173
|
0.157
|
0.102
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009486
|
1.000
|
1.000
|
Hsc_gene_20263.t1
|
Hsc_gene_20260.t1;Hsc_gene_20263.t1
|
— |
Q20448.1 Zinc finger protein ztf-7 [Caenorhabditis elegans]
|
KAF7636165.1 C2H2-type domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.828|GO:0009987_0.789|GO:0065007_0.754|GO:0003674_0.751|GO:0050789_0.737|GO:0050794_0.727|GO:0005488_0.696|GO:0005575_0.681|GO:0008152_0.679|GO:0110165_0.669|GO:0044237_0.662|GO:0005622_0.639|GO:0019222_0.637|GO:0031323_0.633|GO:0016020_0.593|GO:0043226_0.581|GO:0043229_0.557|GO:0005737_0.532|GO:0043227_0.526
|
IPR013087+348-372_399-423_399-428_401-423+|IPR036236+387-467_470-590+|IPR040048+223-610+|IPR041661+349-439_492-544+
|
SM00355+348-372_399-423+
|
PF12756+349-439_492-544+C2H2_type_zinc-finger_(2_copies)
|
— |
PTHR13267+223-610+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-199;599-663
|
1.000
|
200-598
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.667
|
77278.510
|
4.980
|
-20.500
|
32.730
|
11.765
|
56.259
|
43.741
|
15.535
|
17.195
|
43.590
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
5108.432
|
3841.613
|
3366.080
|
4434.753
|
4828.513
|
4901.539
|
4992.162
|
4822.290
|
7697.584
|
4881.096
|
6088.163
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.420
|
0.070
|
0.506
|
0.091
|
— | — | — |
0.193
|
— | — | — | — | — |
No JSON data available for plots.