SCN Proteipedia

Hg_chrom5_TN10mRNA_9831

Organism: Heterodera glycines Gene Locus: chr5:4700996-4707342 Feature type: polypeptide

Protein Sequence

Length: 1,474

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.726	1.104	1.382	0.585	1.911	1.305	0.501	1.119	1.387	1.164	1.1	1.197	1.187	0.691	1.398	0.698	0.556	0.853	0.574	0.938	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9248	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-pJ2_J3_J4	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRAERRHKRKGKK,KKIKKAQKDDENKNRRI	—	—	—	—	—	—	0.000	—	—	0.925	0.064	0.007	0.193	0.046	0.031	0.015	0.005	0.022	0.053

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009487	1.000	1.000	Hsc_gene_20264.t1	Hsc_gene_20264.t1	—	P34703.1 Suppressor of Ty 6 homolog [Caenorhabditis elegans]	XP_042933322.1 SH2 domain containing protein [Brugia malayi];VIO92022.1 SH2 domain containing protein [Brugia malayi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003677\|GO:0006139\|GO:0140673	GO:0008150_0.956\|GO:0009987_0.805\|GO:0005575_0.786\|GO:0110165_0.778\|GO:0008152_0.702\|GO:0005622_0.699\|GO:0044238_0.692\|GO:0044237_0.677\|GO:0009058_0.669\|GO:0043170_0.669\|GO:0044249_0.651\|GO:0009059_0.640\|GO:0006139_0.634\|GO:0010467_0.628\|GO:0090304_0.619\|GO:0034654_0.614\|GO:0141187_0.608\|GO:0016070_0.605\|GO:0032774_0.599\|GO:0006351_0.581\|GO:0006366_0.576\|GO:0006354_0.567\|GO:0006368_0.567\|GO:0065007_0.567\|GO:0050789_0.549\|GO:0071840_0.539\|GO:0016043_0.533\|GO:0032502_0.532\|GO:0048856_0.532\|GO:0003674_0.518\|GO:0016020_0.508	IPR003029+1171-1232_1174-1232+\|IPR006641+726-843+\|IPR010994+895-987_1000-1085+\|IPR012337+726-881+\|IPR012340+1153-1237_1172-1234+\|IPR017072+2-1474_15-1468+\|IPR023319+273-440+\|IPR023323+441-918+\|IPR028088+275-388+\|IPR028231+725-880+\|IPR032706+885-987+\|IPR035018+1373-1462+\|IPR035420+1249-1460+\|IPR036860+1266-1370_1373-1472+\|IPR037027+718-1102+\|IPR041692+1000-1084+\|IPR042066+990-1083+	SM00732+726-843+	PF00575+1171-1232+S1_RNA_binding_domain\|PF14633+1249-1460+SH2_domain\|PF14635+885-987+Helix-hairpin-helix_motif\|PF14639+725-880+Holliday-junction_resolvase-like_of_SPT6\|PF14641+275-388+Helix-turn-helix_DNA-binding_domain_of_SPT6\|PF17674+1000-1084+HHH_domain\|PF22706+511-692+Tex_central_region-like	G3DSA:1.10.10.2740:FF:000002+993-1083+Transcription_elongation_factor_Spt6\|G3DSA:1.10.10.650:FF:000002+273-440+Transcription_elongation_factor_spt6\|G3DSA:1.10.150.850:FF:000001+900-989+Transcription_elongation_factor_spt6	PTHR10145+15-1468+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-236;1474-1474	1.000	237-1473	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.798	171403.190	4.801	-56.500	35.414	10.448	53.528	46.472	16.350	19.064	41.995

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	yellow	3249.130	3303.692	3265.572	3659.567	4161.336	3395.274	3247.856	2833.279	4387.562	1974.305	3008.558

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.246	—	0.273	0.154	-0.279	—	-0.366	0.339	—	—	—	—	—

No JSON data available for plots.

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