Hg_chrom5_TN10mRNA_9833
Organism: Heterodera glycines Gene Locus: chr5:4711010-4717474 Feature type: polypeptideProtein Sequence
Length: 669
(Signal peptide: 1-30)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.765 | 0.834 | 0.87 | 0.619 | 1.121 | 0.728 | 0.623 | 1.345 | 1.03 | 1.03 | 0.906 | 0.967 | 1.287 | 1.179 | 1.312 | 1.409 | 1.446 | 0.725 | 1.84 | 0.835 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9250
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
mitochondria
|
RRHFLEEMAAKKSFR,TKRKTTKIRGKGGEKKGKKSLAHK
|
28-48
|
0.996
|
— | — |
1-30
|
— |
0.970
|
— |
0.000
|
0.200
|
0.095
|
0.027
|
0.265
|
0.094
|
0.042
|
0.156
|
0.033
|
0.232
|
0.845
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009489
|
1.000
|
1.000
|
Hsc_gene_20268.t1
|
Hsc_gene_20266.t1
|
— |
Q9XU75.2 Putative carboxypeptidase suro-1 [Caenorhabditis elegans]
|
RCN53215.1 zinc carboxypeptidase [Ancylostoma caninum]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004181|GO:0006508|GO:0008270
|
GO:0003674_0.701|GO:0008150_0.652|GO:0005575_0.649|GO:0110165_0.649|GO:0003824_0.543|GO:0016787_0.501
|
IPR000834+137-415_166-419_170-184_170-192_258-266_310-323_313-323+|IPR003146+70-148+
|
SM00631+137-415+
|
PF00246+166-419+Zinc_carboxypeptidase|PF02244+70-148+Carboxypeptidase_activation_peptide
|
G3DSA:3.40.630.10:FF:000056+147-431+Zinc_carboxypeptidase
|
PTHR11705+169-429+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
433-625
|
2.000
|
1-432;626-669
|
1dtd_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.819
|
75588.350
|
8.342
|
15.000
|
26.607
|
12.556
|
51.719
|
48.281
|
15.097
|
11.510
|
51.570
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
510.987
|
158.645
|
21.213
|
31.968
|
1122.538
|
2126.606
|
115.563
|
175.722
|
32.136
|
804.371
|
473.413
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.132
|
-2.448
|
0.703
|
5.102
|
0.938
|
-4.194
|
-3.716
|
— |
-4.788
|
— | — | — | — |