Hg_chrom5_TN10mRNA_9836
Organism: Heterodera glycines Gene Locus: chr5:4733401-4736015 Feature type: polypeptideProtein Sequence
Length: 624
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.988 | 1.491 | 0.437 | 0.387 | 0.721 | 1.561 | 0.916 | 1.522 | 0.677 | 1.104 | 0.364 | 0.943 | 0.979 | 1.787 | 1.504 | 1.786 | 0.972 | 0.68 | 0.616 | 0.377 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9253
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.950
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRRR
|
32-52
|
0.998
|
24-47
|
0.997
|
— | — |
0.001
|
— | — |
0.369
|
0.138
|
0.047
|
0.554
|
0.231
|
0.124
|
0.213
|
0.111
|
0.253
|
0.426
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004100
|
1.000
|
2.000
|
Hsc_gene_20994.t2;Hsc_gene_20994.t3
|
Hsc_gene_20994.t2;Hsc_gene_20994.t3
|
— | — |
KAF7639213.1 C2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
145-624
|
1.000
|
1-144
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.976
|
67253.050
|
10.491
|
28.500
|
19.551
|
8.654
|
50.481
|
49.519
|
12.821
|
6.731
|
58.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
655.437
|
1481.197
|
1669.922
|
853.038
|
304.625
|
144.437
|
263.731
|
690.601
|
805.465
|
235.604
|
479.830
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.933
|
-0.860
|
-1.517
|
-1.062
|
0.877
|
2.158
|
-1.251
|
— | — | — | — | — |
No JSON data available for plots.