Hg_chrom5_TN10mRNA_9837
Organism: Heterodera glycines Gene Locus: chr5:4737671-4739666 Feature type: polypeptideProtein Sequence
Length: 400
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.669 | 0.698 | 1.045 | 0.69 | 1.042 | 1.731 | 0.833 | 1.5 | 1.5 | 1.385 | 0.985 | 0.882 | 0.903 | 1.01 | 1.122 | 1.107 | 1.025 | 0.947 | 0.577 | 0.147 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9254
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.530
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
PVRKRLR,KKLGKLHISTCIEREARR
|
— | — |
9-36
|
1.000
|
— | — |
0.000
|
— | — |
0.303
|
0.182
|
0.034
|
0.674
|
0.264
|
0.258
|
0.256
|
0.013
|
0.542
|
0.114
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009492
|
1.000
|
1.000
|
Hsc_gene_20994.t1
|
Hsc_gene_20994.t1;Hsc_gene_20994.t2
|
— | — |
KAH7728424.1 Protein SUE-1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.861|GO:0110165_0.861|GO:0008150_0.800|GO:0005622_0.696|GO:0009987_0.689|GO:0016020_0.658|GO:0005737_0.604|GO:0043226_0.588|GO:0003674_0.583|GO:0043229_0.575|GO:0071840_0.566|GO:0016043_0.560|GO:0065007_0.560|GO:0005488_0.557|GO:0071944_0.545|GO:0005886_0.522|GO:0043227_0.516|GO:0005515_0.513|GO:0043231_0.504
|
IPR000008+98-222_116-218_116-221_236-359_252-359+|IPR035892+97-226_98-218_234-378_235-376+
|
SM00239+116-221_252-359+
|
PF00168+116-218_252-359+C2_domain
|
— |
PTHR10024+83-375+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5;378-400
|
1.000
|
6-377
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.721
|
44218.540
|
7.469
|
6.000
|
27.000
|
7.500
|
50.750
|
49.250
|
15.000
|
12.000
|
49.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
1075.251
|
2545.836
|
2685.778
|
1407.187
|
618.985
|
451.400
|
1068.775
|
1974.495
|
643.541
|
189.396
|
384.030
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.152
|
-0.993
|
-0.824
|
-1.217
|
-0.441
|
1.256
|
2.030
|
-0.744
|
— | — | — | — | — |
No JSON data available for plots.