Hg_chrom5_TN10mRNA_9838
Organism: Heterodera glycines Gene Locus: chr5:4740963-4743488 Feature type: polypeptideProtein Sequence
Length: 488
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.905 | 1.001 | 0.671 | 0.353 | 1.025 | 1.103 | 0.854 | 1.332 | 0.546 | 1.218 | 1.056 | 1.326 | 2.334 | 1.143 | 1.464 | 1.317 | 0.672 | 0.621 | 0.788 | 0.663 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9255
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RKMHRRGAAMRRGNR,KRAKFSDDTEKNRTKQRKT,KNRTKQRKTTKEKGHRRKKNREKAK
|
— | — |
56-78
|
0.993
|
— | — |
0.000
|
— | — |
0.195
|
0.066
|
0.008
|
0.211
|
0.639
|
0.118
|
0.546
|
0.017
|
0.376
|
0.228
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004101
|
1.000
|
2.000
|
Hsc_gene_20993.t1;Hsc_gene_20993.t2
|
Hsc_gene_20993.t1;Hsc_gene_20993.t2
|
— | — |
KAI1731719.1 olfactomedin-like domain-containing protein [Ditylenchus destructor]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003112+177-483_255-478+|IPR050605+129-483+
|
— |
PF02191+255-478+Olfactomedin-like_domain
|
— |
PTHR23192+129-483+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
142-267;484-488
|
2.000
|
1-141;268-483
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.890
|
55150.770
|
10.297
|
27.500
|
26.639
|
14.344
|
48.566
|
51.434
|
16.803
|
9.836
|
47.336
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
126.124
|
327.313
|
307.928
|
130.728
|
34.011
|
27.243
|
99.248
|
106.144
|
4.838
|
160.936
|
94.037
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.317
|
-1.461
|
-1.127
|
-1.978
|
— |
1.875
|
1.859
|
— | — |
5.026
|
— | — | — |
No JSON data available for plots.