Hg_chrom5_TN10mRNA_9839
Organism: Heterodera glycines Gene Locus: chr5:4743561-4745838 Feature type: polypeptideProtein Sequence
Length: 457
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.323 | 0.611 | 0.398 | 1.283 | 0.474 | 0.561 | 0.313 | 1.969 | 0.486 | 0.858 | 0.829 | 0.772 | 2.006 | 1.304 | 0.982 | 3.782 | 0.466 | 0.431 | 0.673 | 0.386 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9256
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKK,KARRSKVRRINAKGKRTKRDEKL
|
— | — |
54-116
|
0.990
|
— | — |
0.000
|
— | — |
0.889
|
0.110
|
0.004
|
0.431
|
0.031
|
0.011
|
0.013
|
0.006
|
0.035
|
0.010
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009493
|
1.000
|
1.000
|
Hsc_gene_20992.t1
|
Hsc_gene_20992.t1
|
— |
Q91660.1 Zinc finger protein GLI3 [Xenopus laevis]
|
XP_030566592.1 transcriptional activator cubitus interruptus isoform X1 [Drosophila novamexicana]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.841|GO:0065007_0.794|GO:0050789_0.793|GO:0009987_0.789|GO:0050794_0.787|GO:0005575_0.766|GO:0008152_0.760|GO:0019222_0.760|GO:0031323_0.760|GO:0044237_0.760|GO:0110165_0.759|GO:0043170_0.748|GO:0060255_0.748|GO:0003674_0.746|GO:0003676_0.746|GO:0005488_0.746|GO:0097159_0.746|GO:0009058_0.744|GO:0009059_0.744|GO:0010467_0.744|GO:0044249_0.744|GO:0009889_0.743|GO:0010556_0.743|GO:0031326_0.743|GO:0010468_0.741|GO:0043226_0.740|GO:0005622_0.738|GO:0043229_0.738|GO:0044238_0.725|GO:0080090_0.725|GO:0006139_0.720|GO:0016070_0.720|GO:0032774_0.720|GO:0034654_0.720|GO:0090304_0.720|GO:0141187_0.720|GO:0016020_0.718|GO:0003677_0.714|GO:0019219_0.710|GO:0051252_0.710|GO:0043565_0.707|GO:0006351_0.704|GO:0005634_0.701|GO:0043227_0.701|GO:0043231_0.701|GO:0003690_0.697|GO:0006355_0.697|GO:2001141_0.697|GO:1990837_0.696|GO:0032501_0.688|GO:0032502_0.678|GO:0048856_0.664|GO:0048518_0.655|GO:0048522_0.645|GO:0007275_0.615|GO:0009893_0.596|GO:0031325_0.592|GO:0006357_0.587|GO:0006366_0.587|GO:0009891_0.584|GO:0031328_0.584|GO:0010604_0.583|GO:0010557_0.579|GO:0001067_0.571|GO:0000976_0.567|GO:0045935_0.564|GO:0051254_0.564|GO:0045893_0.534|GO:1902680_0.534|GO:0048519_0.516|GO:0048513_0.512|GO:0048523_0.511|GO:0048731_0.504|GO:0000977_0.502
|
IPR013087+271-296_273-296_309-336_314-341_342-366_342-371_344-366_372-395_372-400_374-395_401-426_403-426+|IPR036236+271-297_323-381_368-431+|IPR050329+107-446+
|
SM00355+271-296_309-336_342-366_372-395_401-426+
|
PF00096+342-366+Zinc_finger,_C2H2_type|PF13894+372-395+C2H2-type_zinc_finger
|
G3DSA:3.30.160.60:FF:000031+308-337+GLI_family_zinc_finger_3|G3DSA:3.30.160.60:FF:000100+368-395+Zinc_finger_45-like|G3DSA:3.30.160.60:FF:000125+339-367+Putative_zinc_finger_protein_143
|
PTHR19818+107-446+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
422-457
|
1.000
|
1-421
|
2gli_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
48672.330
|
10.033
|
33.000
|
19.256
|
13.348
|
53.392
|
46.608
|
14.223
|
5.033
|
61.488
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
tan
|
165.357
|
163.765
|
233.621
|
81.153
|
28.551
|
86.216
|
37.517
|
473.309
|
245.746
|
125.078
|
176.793
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.283
|
-1.150
|
-1.416
|
-1.536
|
1.607
|
-1.189
|
2.357
|
-3.515
|
— | — | — | — | — |
No JSON data available for plots.