Hg_chrom5_TN10mRNA_9840
Organism: Heterodera glycines Gene Locus: chr5:4746539-4749463 Feature type: polypeptideProtein Sequence
Length: 578
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.106 | 0.966 | 1.195 | 0.06 | 2.364 | 1.73 | 0.927 | 0.519 | 0.73 | 0.655 | 1.573 | 0.916 | 0.721 | 0.433 | 1.483 | 0.766 | 0.737 | 0.76 | 0.532 | 0.611 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9257
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKMEEDLVGVGEEKGLKR,RRKKTGQSNISEQSRKRHA,KVRRKGKATAKNTKAKGQAKGDKKKQR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.941
|
0.046
|
0.043
|
0.138
|
0.045
|
0.016
|
0.025
|
0.006
|
0.066
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009494
|
1.000
|
1.000
|
Hsc_gene_20991.t1
|
Hsc_gene_20991.t1
|
— |
Q3THK3.2 General transcription factor IIF subunit 1 [Mus musculus]
|
KAI1715267.1 transcription initiation factor IIF, alpha subunit (TFIIF-alpha) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003677|GO:0005634|GO:0006367|GO:0032968
|
GO:0008150_0.938|GO:0009987_0.890|GO:0008152_0.790|GO:0044238_0.779|GO:0043170_0.775|GO:0009058_0.773|GO:0044237_0.772|GO:0006139_0.763|GO:0009059_0.755|GO:0044249_0.755|GO:0010467_0.753|GO:0090304_0.744|GO:0034654_0.742|GO:0141187_0.734|GO:0016070_0.731|GO:0032774_0.723|GO:0006351_0.698|GO:0006366_0.689|GO:0005575_0.673|GO:0110165_0.673|GO:0005622_0.636|GO:0065007_0.623|GO:0050789_0.611|GO:0050794_0.593|GO:0043226_0.589|GO:0043229_0.577|GO:0016020_0.572|GO:0003674_0.551|GO:0019222_0.549|GO:0031323_0.540|GO:0060255_0.539|GO:0048518_0.538|GO:0080090_0.537|GO:0048522_0.531|GO:0005488_0.529|GO:0009889_0.526|GO:0031326_0.526|GO:0010556_0.523|GO:0010468_0.522|GO:0043227_0.518|GO:0009893_0.513|GO:0019219_0.509|GO:0010604_0.508|GO:0031325_0.506|GO:0051252_0.506|GO:0009891_0.504|GO:0031328_0.504
|
IPR008851+2-563_10-559+|IPR011039+10-187+|IPR036388+492-575+
|
— |
PF05793+2-563+Transcription_initiation_factor_IIF,_alpha_subunit_(TFIIF-alpha)
|
— |
PTHR13011+10-559+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-135;191-578
|
1.000
|
136-190
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.622
|
65242.780
|
4.993
|
-15.000
|
39.446
|
6.401
|
60.208
|
39.792
|
18.685
|
20.761
|
45.329
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
2472.654
|
3235.816
|
1862.460
|
1779.419
|
2124.240
|
1851.361
|
2210.075
|
1502.048
|
3920.799
|
2415.230
|
3060.474
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.027
|
-1.000
|
— |
0.224
|
-0.183
|
0.267
|
-0.407
|
0.701
|
— | — | — | — | — |
No JSON data available for plots.