Hg_chrom5_TN10mRNA_9841
Organism: Heterodera glycines Gene Locus: chr5:4749665-4751976 Feature type: polypeptideProtein Sequence
Length: 379
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.767 | 1.104 | 1.055 | 0.546 | 1.495 | 0.609 | 0.628 | 0.66 | 1.935 | 0.856 | 1.559 | 1.242 | 1.393 | 0.913 | 1.346 | 0.716 | 0.735 | 0.919 | 1.421 | 0.621 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9258
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.456
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
mitochondrion
|
— |
KKRK,KKMKEEEREKNRKKAI,KKGQQTELDKTFMNFRMKK,KMKEEEREKNRKKAIGKAR
|
36-65
|
0.848
|
48-73
|
0.997
|
— | — |
0.000
|
— | — |
0.093
|
0.718
|
0.104
|
0.094
|
0.414
|
0.028
|
0.084
|
0.053
|
0.100
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009495
|
1.000
|
1.000
|
Hsc_gene_20990.t1
|
Hsc_gene_20990.t1
|
— |
A1A4J8.1 Protein SCO1 homolog, mitochondrial [Bos taurus]
|
KAI6238509.1 Protein SCO1-like protein, mitochondrial [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.930|GO:0009987_0.820|GO:0005575_0.772|GO:0110165_0.771|GO:0016020_0.699|GO:0005622_0.679|GO:0043226_0.647|GO:0005737_0.640|GO:0043229_0.627|GO:0043227_0.586|GO:0043231_0.573|GO:0071840_0.570|GO:0016043_0.555|GO:0044085_0.513|GO:0022607_0.502
|
IPR003782+105-352_185-328_186-323+|IPR013766+180-345+|IPR036249+184-344+
|
— |
PF02630+186-323+SCO1/SenC
|
G3DSA:3.40.30.10:FF:000013+168-350+Blast:Protein_SCO1_homolog,_mitochondrial
|
PTHR12151+105-352+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-11;374-379
|
1.000
|
12-373
|
2gvp_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.746
|
43579.270
|
9.227
|
10.500
|
32.982
|
10.290
|
49.604
|
50.396
|
18.206
|
14.776
|
44.327
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
yellow
|
1626.601
|
1315.662
|
1468.534
|
1412.025
|
1634.691
|
1381.384
|
1541.870
|
1281.122
|
2718.305
|
1314.419
|
1916.085
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.179
|
-0.228
|
0.170
|
— |
0.410
|
— | — | — | — | — |
No JSON data available for plots.