Hg_chrom5_TN10mRNA_9842
Organism: Heterodera glycines Gene Locus: chr5:4752186-4756130 Feature type: polypeptideProtein Sequence
Length: 399
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.699 | 0.758 | 0.638 | 1.21 | 0.501 | 0.707 | 0.507 | 0.376 | 1.838 | 1.558 | 0.57 | 1.327 | 2.019 | 1.06 | 0.716 | 2.005 | 1.027 | 0.873 | 1.542 | 0.811 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9259
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.701
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.090
|
0.033
|
0.018
|
0.220
|
0.361
|
0.339
|
0.249
|
0.004
|
0.856
|
0.239
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009496
|
1.000
|
1.000
|
Hsc_gene_20989.t1
|
Hsc_gene_20989.t1
|
— | — |
KAI6205400.1 G-PROTEIN-RECEP-F1-2 domain-containing protein [Aphelenchoides besseyi];KAI6232417.1 G-PROTEIN-RECEP-F1-2 domain-containing protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.911|GO:0009987_0.819|GO:0065007_0.810|GO:0050789_0.787|GO:0050896_0.755|GO:0005575_0.744|GO:0110165_0.744|GO:0050794_0.739|GO:0051716_0.698|GO:0007154_0.695|GO:0023052_0.691|GO:0016020_0.660|GO:0071944_0.657|GO:0003674_0.653|GO:0007165_0.641|GO:0005886_0.639|GO:0038023_0.635|GO:0060089_0.635|GO:0007186_0.573|GO:0032501_0.545|GO:0004888_0.506
|
IPR000276+27-51_54-261_59-80_107-129_143-164_234-258_272-298+|IPR017452+42-290+
|
— |
PF00001+54-261+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24241+21-318+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
394-399
|
1.000
|
1-393
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.863
|
44205.520
|
7.815
|
4.500
|
14.536
|
12.782
|
40.852
|
59.148
|
8.020
|
6.516
|
52.130
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkturquoise
|
791.609
|
661.348
|
1494.238
|
569.674
|
248.662
|
293.601
|
438.004
|
1625.805
|
872.659
|
809.548
|
836.595
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.946
|
-0.353
|
-1.282
|
-1.229
|
0.255
|
0.588
|
2.371
|
-1.752
|
— | — | — | — | — |
No JSON data available for plots.