Hg_chrom5_TN10mRNA_9844
Organism: Heterodera glycines Gene Locus: chr5:4760730-4764789 Feature type: polypeptideProtein Sequence
Length: 516
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.473 | 1.127 | 0.81 | 0.468 | 0.678 | 0.795 | 0.508 | 1.453 | 1.507 | 1.362 | 0.705 | 2.052 | 1.723 | 1.155 | 1.147 | 0.914 | 1.08 | 1.292 | 1.491 | 1.368 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9261
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
nucleus
|
RRSTDAFPDVPELLRRRVY
|
— | — | — | — |
1-20
|
0.890
|
0.751
|
4.000
|
4.000
|
0.059
|
0.054
|
0.014
|
0.167
|
0.234
|
0.106
|
0.174
|
0.006
|
0.730
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004102
|
1.000
|
2.000
|
Hsc_gene_20987.t1;Hsc_gene_20987.t2
|
Hsc_gene_20987.t1;Hsc_gene_20987.t2
|
— |
Q9N587.2 Acetylcholine receptor subunit alpha-type unc-63 [Caenorhabditis elegans]
|
KAI1722487.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0022848|GO:0034220|GO:0045211
|
GO:0005575_0.935|GO:0110165_0.935|GO:0071944_0.890|GO:0016020_0.882|GO:0005886_0.870|GO:0008150_0.840|GO:0009987_0.805|GO:0065007_0.726|GO:0050789_0.700|GO:0006810_0.698|GO:0051179_0.698|GO:0051234_0.698|GO:0003674_0.692|GO:0055085_0.664|GO:0007154_0.663|GO:0050896_0.663|GO:0023052_0.661|GO:0006811_0.622|GO:0034220_0.622|GO:0007267_0.614|GO:0030054_0.614|GO:0045202_0.613|GO:0098916_0.613|GO:0099536_0.613|GO:0099537_0.613|GO:0007268_0.609|GO:0050794_0.576|GO:0005215_0.566|GO:0022857_0.566|GO:0032501_0.559|GO:0051716_0.557|GO:0038023_0.543|GO:0060089_0.543|GO:0006812_0.541|GO:0098655_0.541|GO:0015075_0.527|GO:0015267_0.521|GO:0022803_0.521|GO:0005216_0.519|GO:0007165_0.519|GO:0003008_0.503
|
IPR002394+58-74_92-106_110-122_128-146+|IPR006029+255-492+|IPR006201+20-494_27-371_71-87_104-115_148-162_242-254+|IPR006202+25-247+|IPR018000+148-162+|IPR036719+249-499+|IPR036734+16-253_25-247+|IPR038050+254-359_432-506+
|
— |
PF02931+25-247+Neurotransmitter-gated_ion-channel_ligand_binding_domain|PF02932+255-492+Neurotransmitter-gated_ion-channel_transmembrane_region
|
G3DSA:2.70.170.10:FF:000013+16-253+Acetylcholine_receptor_subunit_alpha
|
PTHR18945+27-371+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-516
|
8st4_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.775
|
59789.610
|
9.076
|
16.500
|
21.705
|
15.698
|
42.636
|
57.364
|
13.178
|
8.527
|
46.512
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
magenta
|
165.541
|
153.888
|
368.610
|
132.029
|
42.130
|
39.706
|
79.908
|
218.121
|
40.266
|
306.147
|
192.198
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.031
|
-0.358
|
-1.373
|
-1.683
|
— |
1.018
|
2.357
|
-1.309
|
— | — | — | — | — |