Hg_chrom5_TN10mRNA_9845
Organism: Heterodera glycines Gene Locus: chr5:4765855-4769101 Feature type: polypeptideProtein Sequence
Length: 541
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.053 | 0.817 | 1.042 | 0.574 | 1.356 | 0.995 | 0.748 | 1.109 | 0.698 | 1.399 | 0.812 | 1.74 | 1.694 | 0.889 | 1.433 | 1.003 | 0.788 | 0.7 | 0.284 | 0.924 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9262
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.808
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRRR,RRTMSTSMSEHRLEELKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.275
|
0.267
|
0.034
|
0.683
|
0.253
|
0.233
|
0.350
|
0.103
|
0.251
|
0.102
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009498
|
1.000
|
1.000
|
Hsc_gene_20986.t1
|
Hsc_gene_20986.t1
|
— |
P17532.1 Tryptophan 5-hydroxylase 1 [Mus musculus]
|
WCZ39998.1 TPH-1 [Meloidogyne graminicola];WDI23476.1 tryptophan hydroxylase 1 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004497|GO:0005506|GO:0009072|GO:0016714
|
GO:0008150_0.815|GO:0009987_0.719|GO:0003674_0.710|GO:0005575_0.679|GO:0110165_0.670|GO:0008152_0.629|GO:0009058_0.604|GO:0003824_0.574|GO:0005622_0.515
|
IPR001273+61-540+|IPR018301+338-349+|IPR019773+7-541+|IPR019774+163-541_176-396_204-223_295-317_424-537_497-515+|IPR036329+175-395_425-538+|IPR036951+64-541+
|
— |
PF00351+176-396_424-537+Biopterin-dependent_aromatic_amino_acid_hydroxylase
|
— |
PTHR11473+61-540+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-541
|
9hb8_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.566
|
60981.200
|
6.253
|
-2.000
|
28.466
|
11.830
|
47.689
|
52.311
|
14.603
|
13.863
|
47.320
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
532.307
|
474.425
|
1854.122
|
936.910
|
234.598
|
196.812
|
88.829
|
1775.721
|
76.086
|
186.246
|
139.035
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.738
|
0.845
|
-0.876
|
-2.028
|
— |
-1.137
|
3.072
|
-4.180
|
— |
3.781
|
— | — | — |
No JSON data available for plots.