Hg_chrom5_TN10mRNA_9846
Organism: Heterodera glycines Gene Locus: chr5:4770396-4772902 Feature type: polypeptideProtein Sequence
Length: 461
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.504 | 0.958 | 1.183 | 1.272 | 0.976 | 1.057 | 0.981 | 0.976 | 0.964 | 1.319 | 0.723 | 1.531 | 1.265 | 1.168 | 0.93 | 1.178 | 0.747 | 1.085 | 1.835 | 0.638 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9263
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.506
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.426
|
0.240
|
0.086
|
0.508
|
0.232
|
0.165
|
0.117
|
0.184
|
0.475
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009499
|
1.000
|
1.000
|
Hsc_gene_20985.t1
|
Hsc_gene_20985.t1
|
— |
Q569D5.1 Methanethiol oxidase [Xenopus tropicalis]
|
KAI1717475.1 56kDa selenium binding protein (SBP56) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0008430
|
GO:0008150_0.703|GO:0005575_0.693|GO:0110165_0.691|GO:0003674_0.682|GO:0009987_0.638|GO:0005622_0.608|GO:0005488_0.583
|
IPR008826+17-289+|IPR015943+24-395+
|
— |
PF05694+17-289+56kDa_selenium_binding_protein_(SBP56)
|
— |
PTHR23300+17-289+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-461
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.650
|
51359.500
|
4.998
|
-9.500
|
23.644
|
11.063
|
44.685
|
55.315
|
11.280
|
12.364
|
52.928
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey60
|
1055.107
|
1374.730
|
1061.170
|
1073.062
|
1050.922
|
921.530
|
1147.412
|
1058.507
|
674.644
|
1227.359
|
990.481
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.604
|
-0.494
|
0.125
|
— |
-0.175
|
0.327
|
— |
0.259
|
— | — | — | — | — |
No JSON data available for plots.