Hg_chrom5_TN10mRNA_9847
Organism: Heterodera glycines Gene Locus: chr5:4773196-4774507 Feature type: polypeptideProtein Sequence
Length: 237
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.736 | 1.374 | 0.69 | 0.873 | 0.985 | 0.974 | 0.753 | 1.055 | 1.125 | 1.482 | 0.703 | 2.482 | 1.172 | 0.811 | 1.033 | 0.964 | 1.107 | 1.215 | 0.649 | 0.745 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9264
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.421
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.319
|
0.162
|
0.081
|
0.739
|
0.107
|
0.114
|
0.131
|
0.165
|
0.193
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009500
|
1.000
|
1.000
|
Hsc_gene_20984.t1
|
Hsc_gene_20984.t1
|
— |
Q23261.2 Probable methylthioribulose-1-phosphate dehydratase [Caenorhabditis elegans]
|
KAF7636128.1 Aldolase_II domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.894|GO:0110165_0.889|GO:0005622_0.822|GO:0008150_0.707|GO:0005737_0.654|GO:0009987_0.644
|
IPR001303+15-208_16-207+|IPR036409+13-223_15-220+
|
SM01007+15-208+
|
PF00596+16-207+Class_II_Aldolase_and_Adducin_N-terminal_domain
|
— |
PTHR10640+15-217+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-237
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.727
|
26423.570
|
7.278
|
2.500
|
21.519
|
9.705
|
44.726
|
55.274
|
11.814
|
9.705
|
50.633
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
1348.490
|
1357.342
|
909.871
|
1996.501
|
1914.216
|
1526.106
|
1970.273
|
2028.028
|
680.091
|
1001.199
|
863.581
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.806
|
0.420
|
1.242
|
— |
-0.313
|
0.380
|
0.305
|
— | — | — | — | — | — |
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