Hg_chrom5_TN10mRNA_9849
Organism: Heterodera glycines Gene Locus: chr5:4775804-4778116 Feature type: polypeptideProtein Sequence
Length: 431
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.836 | 0.917 | 0.759 | 0.64 | 1.701 | 0.833 | 0.691 | 0.812 | 1.031 | 0.878 | 1.863 | 1.501 | 0.967 | 0.759 | 0.521 | 1.226 | 1.103 | 1.301 | 0.0 | 0.614 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9266
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.986
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKKKPNKKGGGSEKKKTD,LKPKKKKPNKKGGGSEKKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.440
|
0.087
|
0.004
|
0.680
|
0.235
|
0.065
|
0.186
|
0.001
|
0.044
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009502
|
1.000
|
1.000
|
Hsc_gene_20982.t1
|
Hsc_gene_20982.t1
|
— |
Q6AYD3.1 Proliferation-associated protein 2G4 [Rattus norvegicus]
|
KAF7636125.1 Peptidase_M24 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.859|GO:0110165_0.852|GO:0005622_0.812|GO:0005737_0.745|GO:0043226_0.711|GO:0016020_0.705|GO:0008150_0.696|GO:0043229_0.691|GO:0043227_0.650|GO:0043231_0.632|GO:0009987_0.630
|
IPR000994+56-239+|IPR004545+37-414+|IPR036005+36-373_50-385+|IPR036388+280-341+|IPR036390+271-345+|IPR047113+39-419+
|
— |
PF00557+56-239+Metallopeptidase_family_M24
|
G3DSA:1.10.10.10:FF:000029+280-341+Proliferation-associated_2G4,_a
|
PTHR10804+39-419+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-53;392-431
|
1.000
|
54-391
|
2v6c_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.726
|
47454.250
|
7.861
|
5.500
|
30.858
|
7.193
|
53.364
|
46.636
|
16.473
|
14.385
|
50.812
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
4612.879
|
3093.494
|
3545.593
|
5273.379
|
5793.363
|
4671.403
|
4316.356
|
2898.889
|
7782.777
|
3247.085
|
5190.953
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.632
|
0.681
|
0.104
|
-0.296
|
— |
-0.795
|
0.718
|
— | — | — | — | — |
No JSON data available for plots.