Hg_chrom5_TN10mRNA_9851
Organism: Heterodera glycines Gene Locus: chr5:4791429-4791735 Feature type: polypeptideProtein Sequence
Length: 70
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.498 | 0.664 | 1.039 | 0.493 | 0.952 | 1.465 | 0.17 | 0.0 | 0.952 | 1.544 | 3.247 | 0.84 | 1.19 | 0.824 | 1.458 | 0.408 | 1.171 | 1.082 | 0.0 | 0.42 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9268
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRKDAKSVKIKKNKE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.721
|
0.204
|
0.096
|
0.476
|
0.152
|
0.120
|
0.081
|
0.010
|
0.044
|
0.252
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009504
|
1.000
|
1.000
|
Hsc_gene_20979.t1
|
Hsc_gene_20979.t1
|
— |
Q4GX86.1 Large ribosomal subunit protein eL38 [Timarcha balearica]
|
KAI1722231.1 ribosomal l38e protein family domain-containing protein [Ditylenchus destructor];KAI1731183.1 ribosomal l38e protein family domain-containing protein [Ditylenchus destructor];KAI1731185.1 ribosomal l38e protein family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.946|GO:0110165_0.946|GO:0005622_0.832|GO:0005737_0.738|GO:0043226_0.662|GO:0043229_0.662|GO:0005829_0.570|GO:0043228_0.529|GO:0043232_0.529
|
IPR002675+1-69_2-69+|IPR038464+1-70+
|
— |
PF01781+2-69+Ribosomal_L38e_protein_family
|
G3DSA:3.30.720.90:FF:000001+1-70+60S_ribosomal_protein_L38
|
PTHR10965+1-69+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-70
|
9ndp_k
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.965
|
8259.880
|
10.973
|
12.000
|
40.000
|
5.714
|
58.571
|
41.429
|
28.571
|
11.429
|
37.143
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
4167.787
|
2901.237
|
2862.354
|
5231.486
|
5759.010
|
4650.102
|
2688.676
|
1994.296
|
4383.414
|
5163.823
|
4829.362
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.249
|
0.714
|
0.979
|
0.106
|
-0.293
|
-0.781
|
-1.327
|
0.573
|
— | — | — | — | — |
No JSON data available for plots.