Hg_chrom5_TN10mRNA_9852
Organism: Heterodera glycines Gene Locus: chr5:4791912-4797732 Feature type: polypeptideProtein Sequence
Length: 1,208
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.751 | 1.02 | 0.903 | 0.542 | 1.628 | 1.146 | 0.68 | 1.242 | 0.846 | 1.443 | 0.803 | 1.12 | 1.081 | 0.844 | 1.352 | 1.265 | 0.869 | 0.84 | 1.019 | 0.755 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9269
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RKTNMDLISGIYLRVRHR
|
42-66
|
0.982
|
— | — | — | — |
0.000
|
— | — |
0.434
|
0.146
|
0.016
|
0.517
|
0.249
|
0.296
|
0.292
|
0.059
|
0.226
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009505
|
1.000
|
1.000
|
Hsc_gene_20978.t1
|
Hsc_gene_20978.t1
|
— |
Q9ULQ0.2 Striatin-interacting protein 2 [Homo sapiens]
|
KAH7698718.1 Protein FARL-11, partial [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.812|GO:0005575_0.675|GO:0110165_0.674|GO:0009987_0.613|GO:0005622_0.601|GO:0065007_0.578|GO:0050789_0.564|GO:0003674_0.511
|
IPR012486+84-510_86-436+|IPR021819+751-1178_794-944_979-1109+|IPR040185+677-1190+
|
SM01292+84-510+|SM01293+751-1178+
|
PF07923+86-436+N1221-like_protein|PF11882+794-944_979-1109+Domain_of_unknown_function_(DUF3402)
|
— |
PTHR13239+677-1190+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;260-308;460-722
|
3.000
|
3-259;309-459;723-1208
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.540
|
136730.910
|
5.461
|
-19.000
|
29.139
|
10.265
|
52.152
|
47.848
|
14.404
|
14.735
|
47.185
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
yellow
|
2194.687
|
2584.435
|
2601.439
|
2779.495
|
2955.545
|
2590.803
|
3375.586
|
2293.298
|
2460.156
|
563.912
|
1376.588
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.220
|
— |
0.204
|
— |
-0.176
|
0.392
|
-0.281
|
0.700
|
1.994
|
— | — | — | — |
No JSON data available for plots.