Hg_chrom5_TN10mRNA_9855
Organism: Heterodera glycines Gene Locus: chr5:4807333-4811940 Feature type: polypeptideProtein Sequence
Length: 552
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.59 | 1.559 | 0.659 | 0.5 | 1.057 | 1.161 | 0.647 | 1.087 | 1.57 | 1.077 | 0.604 | 2.344 | 1.812 | 1.15 | 1.294 | 0.906 | 0.802 | 0.878 | 1.533 | 1.119 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9272
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.815
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRTPPAGLIKCKKRWE
|
— | — | — | — | — | — |
0.315
|
— | — |
0.054
|
0.092
|
0.035
|
0.121
|
0.175
|
0.209
|
0.311
|
0.015
|
0.778
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009507
|
1.000
|
1.000
|
Hsc_gene_20975.t1
|
Hsc_gene_20975.t1
|
— |
Q18812.1 Acetylcholine-gated chloride channel subunit acc-2 [Caenorhabditis elegans]
|
KAI1719268.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0004890|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0034220
|
GO:0008150_0.965|GO:0009987_0.931|GO:0005575_0.890|GO:0110165_0.889|GO:0016020_0.846|GO:0065007_0.812|GO:0003674_0.806|GO:0051179_0.800|GO:0006810_0.790|GO:0051234_0.790|GO:0050789_0.787|GO:0071944_0.773|GO:0005886_0.761|GO:0055085_0.725|GO:0023052_0.724|GO:0007154_0.723|GO:0006811_0.694|GO:0034220_0.692|GO:0050794_0.682|GO:0050896_0.663|GO:0005215_0.651|GO:0022857_0.651|GO:0005216_0.628|GO:0015075_0.628|GO:0015267_0.628|GO:0022803_0.628|GO:0051716_0.609|GO:0022836_0.602|GO:0007267_0.595|GO:0030054_0.594|GO:0032501_0.585|GO:0015276_0.584|GO:0022834_0.584|GO:0007268_0.566|GO:0045202_0.566|GO:0098916_0.566|GO:0099536_0.566|GO:0099537_0.566|GO:0098660_0.556|GO:0005230_0.540|GO:0007165_0.539|GO:0006820_0.536|GO:0015698_0.533|GO:0006821_0.532|GO:0098656_0.532|GO:0015318_0.523|GO:0065008_0.522|GO:0008509_0.517|GO:0005253_0.513|GO:0098661_0.507|GO:1902476_0.503
|
IPR002289+271-284_371-383_500-514+|IPR006028+317-337_343-364_377-398_512-532+|IPR006029+322-423+|IPR006201+106-515_150-166_185-196_231-245_308-320+|IPR006202+106-313+|IPR018000+231-245+|IPR036719+315-533+|IPR036734+92-311_103-313+|IPR038050+312-546+
|
— |
PF02931+106-313+Neurotransmitter-gated_ion-channel_ligand_binding_domain|PF02932+322-423+Neurotransmitter-gated_ion-channel_transmembrane_region
|
— |
PTHR18945+106-515+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
413-463
|
2.000
|
1-412;464-552
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.783
|
63929.430
|
7.897
|
8.000
|
22.464
|
14.493
|
44.928
|
55.072
|
12.500
|
9.964
|
45.290
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
violet
|
252.796
|
184.924
|
757.148
|
233.356
|
148.240
|
131.682
|
117.871
|
424.312
|
259.015
|
162.646
|
203.947
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.804
|
0.199
|
-1.589
|
-0.685
|
— | — |
1.585
|
-1.708
|
— | — | — | — | — |
No JSON data available for plots.