Hg_chrom5_TN10mRNA_9857
Organism: Heterodera glycines Gene Locus: chr5:4822015-4825882 Feature type: polypeptideProtein Sequence
Length: 607
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.728 | 0.92 | 1.078 | 0.739 | 1.236 | 0.845 | 0.883 | 1.647 | 1.647 | 1.158 | 0.973 | 1.551 | 1.602 | 0.95 | 0.975 | 1.012 | 0.729 | 0.749 | 0.76 | 0.678 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9274
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.738
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KKIYSVNGHNFHQKRLNKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.468
|
0.147
|
0.021
|
0.699
|
0.136
|
0.413
|
0.200
|
0.009
|
0.355
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009509
|
1.000
|
1.000
|
Hsc_gene_20973.t1
|
Hsc_gene_20973.t1
|
— |
Q19266.1 Protein kinase C-like 3 [Caenorhabditis elegans]
|
KAI1699042.1 protein kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0004674|GO:0005515|GO:0005524|GO:0006468
|
GO:0008150_0.987|GO:0009987_0.963|GO:0065007_0.893|GO:0050896_0.875|GO:0005575_0.870|GO:0110165_0.859|GO:0005622_0.833|GO:0003674_0.831|GO:0003824_0.831|GO:0004672_0.831|GO:0016301_0.831|GO:0016740_0.831|GO:0016772_0.831|GO:0016773_0.831|GO:0050789_0.831|GO:0140096_0.831|GO:0050794_0.823|GO:0004674_0.813|GO:0032501_0.760|GO:0051716_0.724|GO:0016020_0.722|GO:0071944_0.714|GO:0051179_0.699|GO:0048518_0.698|GO:0005886_0.687|GO:0032502_0.681|GO:0048856_0.681|GO:0016043_0.675|GO:0071840_0.675|GO:0007154_0.673|GO:0023052_0.669|GO:0005737_0.655|GO:0007165_0.643|GO:0048522_0.643|GO:0008152_0.613|GO:0007275_0.612|GO:0048519_0.594|GO:0006810_0.583|GO:0051234_0.583|GO:0048583_0.572|GO:0043226_0.568|GO:0010646_0.564|GO:0005488_0.561|GO:0023051_0.561|GO:0043170_0.556|GO:0051641_0.545|GO:0044237_0.541|GO:0019538_0.539|GO:0036211_0.539|GO:0043412_0.539|GO:0044238_0.539|GO:0042221_0.520|GO:0048523_0.516|GO:0006793_0.515|GO:0006796_0.515|GO:0006468_0.509|GO:0016310_0.509|GO:0032879_0.509|GO:0030054_0.507|GO:0048731_0.501
|
IPR000270+9-92_11-90+|IPR000719+262-532_263-517+|IPR000961+534-597_534-605+|IPR002219+124-174_125-174_125-175+|IPR008271+383-395+|IPR011009+259-590+|IPR012233+1-607+|IPR017441+268-295+|IPR017892+554-595+|IPR020454+122-136_138-147_151-162_163-175+|IPR046349+104-174+|IPR053793+9-92+
|
SM00109+125-174+|SM00133+534-597+|SM00220+262-532+|SM00666+9-92+
|
PF00069+263-517+Protein_kinase_domain|PF00130+125-175+Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)|PF00433+554-595+Protein_kinase_C_terminal_domain|PF00564+11-90+PB1_domain
|
G3DSA:1.10.510.10:FF:000048+347-554+Protein_kinase_C|G3DSA:3.10.20.90:FF:000071+6-95+Protein_kinase_C|G3DSA:3.30.200.20:FF:000070+259-368+Protein_kinase_C
|
PTHR24351+252-599+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-607
|
4dc2_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.593
|
68142.840
|
6.263
|
-3.000
|
27.842
|
12.356
|
46.623
|
53.377
|
14.498
|
13.344
|
47.117
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
lightcyan
|
1628.414
|
1825.015
|
1765.659
|
1701.991
|
1666.336
|
1944.871
|
2429.637
|
2051.670
|
898.304
|
1431.139
|
1202.781
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.277
|
-0.238
|
— | — |
0.238
|
0.331
|
— |
0.387
|
— | — | — | — | — |
No JSON data available for plots.