SCN Proteipedia

Hg_chrom5_TN10mRNA_9858

Organism: Heterodera glycines Gene Locus: chr5:4826247-4834525 Feature type: polypeptide

Protein Sequence

Length: 1,557

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.769	1.016	1.039	0.532	1.017	1.466	0.658	1.156	1.242	1.354	0.769	1.7	1.249	1.0	1.18	1.385	0.811	0.778	0.692	0.699	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9275	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	PKPS,RRLKTVLVMDKKVQK	—	—	11-33	0.984	—	—	0.000	—	—	0.275	0.198	0.027	0.707	0.218	0.501	0.270	0.100	0.357	0.070

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009510	1.000	1.000	Hsc_gene_20972.t1	Hsc_gene_20972.t1	—	Q21029.4 Mitogen-activated protein kinase kinase kinase nsy-1 [Caenorhabditis elegans]	KAF7636114.1 Protein kinase domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000165\|GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.961\|GO:0009987_0.893\|GO:0005575_0.879\|GO:0110165_0.875\|GO:0065007_0.804\|GO:0005622_0.802\|GO:0050789_0.793\|GO:0050794_0.779\|GO:0003674_0.766\|GO:0050896_0.727\|GO:0051716_0.687\|GO:0003824_0.662\|GO:0140096_0.662\|GO:0007154_0.648\|GO:0023052_0.645\|GO:0016740_0.639\|GO:0007165_0.633\|GO:0016772_0.592\|GO:0016301_0.581\|GO:0004672_0.574\|GO:0016773_0.574\|GO:0016020_0.548\|GO:0035556_0.535\|GO:0005737_0.525\|GO:0141124_0.501	IPR000719+654-915_659-915+\|IPR008271+776-788+\|IPR011009+659-995+\|IPR013761+1462-1529_1467-1527+\|IPR017441+660-683+\|IPR025136+121-506+\|IPR043969+520-628+\|IPR046872+76-106+\|IPR046873+1164-1312+	SM00220+654-915+	PF00069+659-915+Protein_kinase_domain\|PF13281+121-506+MAP3K_TRAFs-binding_domain\|PF19039+520-628+ASK_kinase_PH_domain\|PF20302+1164-1312+HisK-N-like_globin_domain_of_the_ASK_signalosome\|PF20309+76-106+Deoxyribohydrolase_(DRHyd)_domain_of_the_ASK_signalosome	—	PTHR11584+62-1225+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1103-1146;1405-1458;1535-1557	3.000	1-1102;1147-1404;1459-1534	8qgy_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.719	174591.400	6.644	3.000	24.984	10.083	49.711	50.289	13.166	11.818	48.748

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	tan	2642.701	4951.131	3522.711	2216.524	1612.260	1932.735	3722.699	2749.484	3421.926	1230.041	2169.421

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.721	-1.297	-0.560	-0.491	0.276	0.957	0.404	0.580	—	—	—	—	—

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