Hg_chrom5_TN10mRNA_9859
Organism: Heterodera glycines Gene Locus: chr5:4842066-4844285 Feature type: polypeptideProtein Sequence
Length: 566
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.068 | 0.986 | 0.546 | 1.158 | 0.442 | 1.087 | 0.652 | 1.325 | 0.824 | 1.361 | 0.616 | 0.831 | 1.521 | 0.917 | 1.659 | 1.464 | 0.898 | 1.071 | 2.039 | 0.624 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9276
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.912
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RRKR,RKQSSVSGEATPKRCRV,KKATFASGKSLSPSDRLRK
|
31-66
|
0.974
|
— | — | — | — |
0.000
|
— | — |
0.092
|
0.237
|
0.016
|
0.137
|
0.180
|
0.225
|
0.223
|
0.011
|
0.787
|
0.156
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009511
|
1.000
|
1.000
|
Hsc_gene_20970.t1
|
Hsc_gene_20970.t1
|
— | — |
KAI1708634.1 7 transmembrane receptor (rhodopsin family) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
— |
IPR000276+11-35_56-367_99-121_105-121_194-217_288-312_349-375+|IPR017452+26-367+
|
— |
PF00001+56-367+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24229+12-396+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
444-566
|
1.000
|
1-443
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.742
|
63300.980
|
10.525
|
44.500
|
20.495
|
12.898
|
44.700
|
55.300
|
14.841
|
5.654
|
52.827
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
44.442
|
19.098
|
73.135
|
26.392
|
40.659
|
21.792
|
82.176
|
39.135
|
0.000
|
81.038
|
46.307
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.706
|
— |
-1.358
|
0.592
|
-0.887
|
1.927
|
0.742
|
1.214
|
-7.168
|
5.579
|
— | — | — |
No JSON data available for plots.