Hg_chrom5_TN10mRNA_9861
Organism: Heterodera glycines Gene Locus: chr5:4845205-4845560 Feature type: polypeptideProtein Sequence
Length: 85
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.094 | 1.094 | 0.428 | 0.406 | 1.176 | 0.0 | 0.56 | 0.588 | 0.261 | 1.272 | 1.07 | 0.692 | 2.614 | 2.036 | 1.441 | 0.504 | 1.157 | 0.891 | 0.905 | 1.73 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9278
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.331
|
0.662
|
0.018
|
0.703
|
0.251
|
0.280
|
0.150
|
0.016
|
0.208
|
0.141
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002090
|
3.000
|
1.000
|
Hsc_gene_13037.t1
|
Hsc_gene_13037.t1;Hsc_gene_17425.t1;Hsc_gene_20969.t1
|
— |
Q96SU4.2 Oxysterol-binding protein-related protein 9 [Homo sapiens]
|
XP_024506357.1 Oxysterol-binding protein-related protein 9 [Strongyloides ratti];CEF67157.1 Oxysterol-binding protein-related protein 9 [Strongyloides ratti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008289
|
GO:0005575_0.816|GO:0110165_0.807|GO:0008150_0.749|GO:0009987_0.684|GO:0005622_0.672|GO:0016020_0.657|GO:0043226_0.636|GO:0043229_0.615|GO:0005737_0.588|GO:0043227_0.583|GO:0043231_0.583
|
IPR000648+1-71_2-72+|IPR037239+1-73+
|
— |
PF01237+2-72+Oxysterol-binding_protein
|
— |
PTHR10972+1-71+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-85
|
8p7a_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.806
|
9789.300
|
9.754
|
4.500
|
24.706
|
17.647
|
40.000
|
60.000
|
15.294
|
9.412
|
49.412
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
brown
|
11.264
|
4.602
|
17.414
|
22.182
|
18.850
|
9.100
|
26.412
|
32.855
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.690
|
2.134
|
— | — |
-1.036
|
1.550
|
1.742
|
— | — |
5.328
|
— | — | — |
No JSON data available for plots.