Hg_chrom5_TN10mRNA_9862
Organism: Heterodera glycines Gene Locus: chr5:4848732-4853711 Feature type: polypeptideProtein Sequence
Length: 1,063
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.919 | 1.05 | 1.334 | 0.551 | 1.082 | 1.254 | 0.37 | 1.082 | 1.317 | 1.627 | 0.855 | 1.494 | 1.516 | 0.669 | 1.306 | 0.874 | 0.725 | 0.955 | 0.724 | 0.802 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9279
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.920
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKR,PARKKAKVQGNNAMPKRGPRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.874
|
0.033
|
0.008
|
0.321
|
0.059
|
0.100
|
0.051
|
0.012
|
0.050
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009512
|
1.000
|
1.000
|
Hsc_gene_20968.t1
|
Hsc_gene_20968.t1
|
— |
Q19555.1 Cohesin subunit scc-3 [Caenorhabditis elegans]
|
KAI1723640.1 STAG domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.816|GO:0005575_0.809|GO:0110165_0.805|GO:0005622_0.737|GO:0016020_0.728|GO:0009987_0.699|GO:0043226_0.681|GO:0043229_0.663|GO:0043227_0.627|GO:0043231_0.604|GO:0071840_0.558|GO:0016043_0.553|GO:0006996_0.507|GO:0043228_0.503|GO:0043232_0.503
|
IPR013721+153-259+|IPR016024+99-910+|IPR020839+286-371_291-365+|IPR039662+33-1059+
|
— |
PF08514+153-259+STAG_domain|PF21581+291-365+Stromalin_conservative_domain
|
— |
PTHR11199+33-1059+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-68
|
1.000
|
69-1063
|
6rrc_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.614
|
122049.160
|
5.990
|
-7.500
|
28.034
|
11.289
|
47.977
|
52.023
|
14.205
|
13.829
|
44.779
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkgrey
|
3553.784
|
2522.804
|
1507.204
|
1690.843
|
2219.857
|
1604.342
|
2660.898
|
1323.349
|
1024.441
|
9705.990
|
5985.326
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.973
|
-0.714
|
0.275
|
0.361
|
-0.454
|
0.739
|
-0.382
|
1.148
|
-3.350
|
— | — | — | — |
No JSON data available for plots.