Hg_chrom5_TN10mRNA_9863
Organism: Heterodera glycines Gene Locus: chr5:4854569-4856362 Feature type: polypeptideProtein Sequence
Length: 322
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 0.722 | 1.186 | 0.535 | 0.983 | 1.274 | 0.887 | 1.553 | 0.966 | 1.595 | 0.847 | 1.827 | 1.467 | 0.896 | 0.697 | 1.242 | 0.56 | 0.988 | 0.717 | 0.731 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9280
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.949
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.520
|
0.271
|
0.093
|
0.571
|
0.240
|
0.174
|
0.177
|
0.459
|
0.089
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009513
|
1.000
|
1.000
|
Hsc_gene_20967.t1
|
Hsc_gene_20967.t1
|
— |
P19623.1 Spermidine synthase [Homo sapiens]
|
KAF7639177.1 PABS domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824
|
GO:0008150_0.888|GO:0003674_0.566|GO:0005575_0.504|GO:0008152_0.501
|
IPR001045+5-315_7-313_44-307+|IPR029063+41-313_89-315+|IPR030373+111-124+|IPR030374+34-267+|IPR035246+44-86+|IPR037163+1-88+
|
— |
PF01564+90-268+Spermine/spermidine_synthase_domain|PF17284+44-86+Spermidine_synthase_tetramerisation_domain
|
G3DSA:3.40.50.150:FF:000013+87-314+Spermidine_synthase
|
PTHR11558+5-315+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
318-322
|
1.000
|
1-317
|
2b2c_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.516
|
35646.700
|
5.364
|
-6.000
|
24.534
|
11.801
|
44.720
|
55.280
|
12.112
|
12.422
|
49.068
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1594.372
|
1075.270
|
1366.370
|
1935.118
|
2232.547
|
1613.795
|
1577.113
|
1427.667
|
2106.267
|
1185.222
|
1579.955
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.116
|
0.711
|
0.611
|
0.174
|
-0.454
|
— |
-0.282
|
0.287
|
— | — | — | — | — |
No JSON data available for plots.