Hg_chrom5_TN10mRNA_9868
Organism: Heterodera glycines Gene Locus: chr5:4866017-4869085 Feature type: polypeptideProtein Sequence
Length: 558
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.063 | 1.125 | 0.619 | 0.742 | 0.657 | 0.322 | 0.277 | 1.344 | 1.155 | 1.816 | 0.597 | 1.37 | 2.638 | 0.827 | 0.987 | 1.69 | 0.734 | 1.14 | 0.965 | 0.474 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9285
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.683
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — |
5-35
|
0.924
|
— | — | — | — |
0.000
|
— | — |
0.514
|
0.216
|
0.020
|
0.263
|
0.331
|
0.198
|
0.212
|
0.094
|
0.152
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009517
|
1.000
|
1.000
|
Hsc_gene_20963.t1
|
Hsc_gene_20963.t1
|
— | — |
KAH7729887.1 CRE-NPP-22 protein [Aphelenchus avenae]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.933|GO:0110165_0.933|GO:0016020_0.913|GO:0005886_0.880|GO:0071944_0.880|GO:0005622_0.800|GO:0043226_0.782|GO:0043229_0.764|GO:0043227_0.757|GO:0043231_0.757|GO:0005737_0.748|GO:0005773_0.741|GO:0012505_0.703|GO:0008150_0.615|GO:0032991_0.605|GO:0009987_0.574|GO:0031967_0.562|GO:0005634_0.560|GO:0005635_0.548|GO:0140513_0.545|GO:0005643_0.540
|
IPR019049+5-552_5-556+
|
— |
PF09531+5-552+Nucleoporin_protein_Ndc1-Nup
|
— |
PTHR13269+5-556+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-558
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.807
|
62537.000
|
8.611
|
15.500
|
18.817
|
15.054
|
41.219
|
58.781
|
11.470
|
7.348
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
lightgreen
|
895.529
|
1075.882
|
848.621
|
1058.572
|
1174.843
|
956.654
|
1197.944
|
813.338
|
275.867
|
1038.844
|
711.854
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.573
|
-0.160
|
0.428
|
0.119
|
-0.282
|
0.329
|
-0.339
|
0.695
|
— | — | — | — | — |
No JSON data available for plots.