Hg_chrom5_TN10mRNA_9873
Organism: Heterodera glycines Gene Locus: chr5:4876139-4880456 Feature type: polypeptideProtein Sequence
Length: 647
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.665 | 1.222 | 0.787 | 0.48 | 1.391 | 1.149 | 0.883 | 1.082 | 1.133 | 0.982 | 0.796 | 1.0 | 1.674 | 0.892 | 1.072 | 1.148 | 0.861 | 0.796 | 2.14 | 1.273 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9289
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-19
|
0.844
|
0.536
|
0.000
|
0.000
|
0.287
|
0.262
|
0.041
|
0.330
|
0.249
|
0.221
|
0.151
|
0.033
|
0.226
|
0.729
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009520
|
1.000
|
1.000
|
Hsc_gene_20959.t1
|
Hsc_gene_20959.t1
|
— |
Q9BL07.1 Putative phospholipase B-like 3 [Caenorhabditis elegans]
|
KAH7731520.1 Protein F09B12.3 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004620
|
GO:0005575_0.906|GO:0110165_0.906|GO:0016020_0.646|GO:0043226_0.599|GO:0005622_0.567|GO:0043227_0.560|GO:0005737_0.522
|
IPR007000+42-625_128-625+
|
— |
PF04916+128-625+Phospholipase_B
|
— |
PTHR12370+42-625+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
620-647
|
1.000
|
1-619
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.662
|
74099.150
|
5.677
|
-7.000
|
25.348
|
15.301
|
48.377
|
51.623
|
12.674
|
12.674
|
47.295
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
brown
|
4482.068
|
3550.750
|
5355.577
|
4126.047
|
5502.842
|
6755.789
|
13713.416
|
5390.752
|
2011.386
|
1452.316
|
1691.918
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.364
|
0.080
|
-0.268
|
0.384
|
0.311
|
1.032
|
-0.431
|
1.490
|
— | — |
2.145
|
— | — |