Hg_chrom5_TN10mRNA_9875
Organism: Heterodera glycines Gene Locus: chr5:4884359-4886539 Feature type: polypeptideProtein Sequence
Length: 414
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.59 | 1.236 | 1.01 | 2.665 | 1.006 | 1.239 | 0.863 | 1.691 | 0.913 | 1.371 | 0.439 | 0.853 | 1.208 | 0.836 | 0.937 | 1.38 | 0.792 | 0.732 | 0.372 | 0.924 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9291
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cell_membrane
|
— | — | — | — | — | — |
1-20
|
0.998
|
1.000
|
0.000
|
0.000
|
0.049
|
0.114
|
0.002
|
0.102
|
0.184
|
0.128
|
0.304
|
0.049
|
0.890
|
0.212
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004104
|
2.000
|
1.000
|
Hsc_gene_20957.t1
|
Hsc_gene_20957.t1
|
— | — |
KAI1717227.1 activin types I and II receptor domain protein [Ditylenchus destructor]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.962|GO:0065007_0.928|GO:0050789_0.920|GO:0005575_0.916|GO:0110165_0.912|GO:0009987_0.905|GO:0050794_0.901|GO:0050896_0.880|GO:0032501_0.861|GO:0051716_0.850|GO:0003674_0.848|GO:0023052_0.845|GO:0007154_0.842|GO:0032502_0.833|GO:0048856_0.833|GO:0016020_0.831|GO:0007165_0.821|GO:0048518_0.815|GO:0007275_0.800|GO:0005488_0.798|GO:0048522_0.798|GO:0005515_0.792|GO:0048731_0.781|GO:0048869_0.775|GO:0030154_0.774|GO:0010646_0.773|GO:0048583_0.772|GO:0007166_0.771|GO:0060089_0.770|GO:0008152_0.767|GO:0023051_0.767|GO:0043170_0.767|GO:0005622_0.766|GO:0019222_0.765|GO:0038023_0.763|GO:0031323_0.757|GO:0044237_0.757|GO:0051239_0.757|GO:0044238_0.748|GO:0060255_0.748|GO:0009966_0.746|GO:0048513_0.745|GO:0080090_0.738|GO:0009058_0.736|GO:0009059_0.735|GO:0009893_0.735|GO:0044249_0.735|GO:0050793_0.735|GO:0010467_0.734|GO:0009653_0.731|GO:0010604_0.731|GO:0009889_0.729|GO:0010647_0.726|GO:0031325_0.726|GO:0010556_0.725|GO:0031326_0.725|GO:0010468_0.723|GO:0023056_0.722|GO:0048584_0.721|GO:0009719_0.719|GO:0009888_0.716|GO:0051240_0.716|GO:0009891_0.714|GO:0031328_0.714|GO:0035556_0.711|GO:0009967_0.709|GO:0010557_0.709|GO:0006139_0.707|GO:0045595_0.707|GO:0034654_0.706|GO:0065009_0.706|GO:0019219_0.703|GO:0003824_0.702|GO:0004888_0.702|GO:0016070_0.702|GO:0032774_0.702|GO:0048870_0.702|GO:0050790_0.702|GO:0090304_0.702|GO:0141187_0.702|GO:0006351_0.701|GO:0051252_0.701|GO:0140096_0.701|GO:0006355_0.700|GO:0016477_0.700|GO:0051094_0.700|GO:2001141_0.700|GO:0001775_0.698|GO:0071495_0.696|GO:0072359_0.696|GO:0045597_0.693|GO:0007167_0.692|GO:0045935_0.692|GO:0051254_0.692|GO:0006793_0.691|GO:0006796_0.691|GO:0070848_0.691|GO:0071363_0.688|GO:1902680_0.688|GO:0009887_0.687|GO:0045893_0.687|GO:0051174_0.685|GO:0007178_0.684|GO:0007507_0.684|GO:0016787_0.684|GO:0019220_0.684|GO:0141091_0.682|GO:0043085_0.681|GO:0044093_0.681|GO:0051336_0.680|GO:0060485_0.680|GO:0090287_0.680|GO:0010562_0.679|GO:0045937_0.678|GO:0090092_0.678|GO:0016740_0.677|GO:0048762_0.677|GO:0071559_0.677|GO:0071560_0.677|GO:0007179_0.676|GO:0051345_0.676|GO:0003007_0.675|GO:0030509_0.674|GO:0071772_0.674|GO:0071773_0.674|GO:0001837_0.670|GO:0004035_0.670|GO:0010692_0.670|GO:0010694_0.670|GO:0010717_0.670|GO:0010718_0.670|GO:0010921_0.670|GO:0010922_0.670|GO:0016311_0.670|GO:0016788_0.670|GO:0016791_0.670|GO:0030510_0.670|GO:0030513_0.670|GO:0032924_0.670|GO:0035303_0.670|GO:0035306_0.670|GO:0042118_0.670|GO:0042578_0.670|GO:0060317_0.670|GO:0090100_0.670|GO:0019838_0.664|GO:0016772_0.657|GO:0004672_0.655|GO:0016301_0.655|GO:0016773_0.655|GO:0019955_0.655|GO:0004674_0.654|GO:0004675_0.650|GO:0005024_0.650|GO:0005025_0.650|GO:0019199_0.650|GO:0050431_0.650
|
— | — | — | — |
PTHR37433+7-270+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-414
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.570
|
45738.550
|
5.113
|
-10.000
|
22.464
|
11.353
|
47.101
|
52.899
|
10.870
|
11.594
|
54.589
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
yellowgreen
|
348.931
|
121.125
|
192.409
|
123.524
|
670.088
|
990.389
|
260.002
|
212.354
|
312.190
|
328.721
|
321.636
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.437
|
— |
-0.530
|
2.406
|
0.581
|
-1.920
|
-2.333
|
0.436
|
— | — |
2.541
|
— | — |