Hg_chrom5_TN10mRNA_9876
Organism: Heterodera glycines Gene Locus: chr5:4884359-4886740 Feature type: polypeptideProtein Sequence
Length: 481
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.556 | 1.112 | 0.907 | 2.581 | 0.866 | 1.119 | 0.743 | 2.079 | 1.016 | 1.545 | 0.441 | 0.856 | 1.502 | 0.88 | 0.849 | 1.485 | 0.716 | 0.756 | 0.32 | 0.978 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9291
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — |
5-25
|
0.988
|
— | — | — | — |
0.001
|
— | — |
0.065
|
0.070
|
0.003
|
0.135
|
0.255
|
0.220
|
0.328
|
0.019
|
0.730
|
0.387
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004104
|
2.000
|
1.000
|
Hsc_gene_20957.t1
|
Hsc_gene_20957.t1
|
— | — |
KAI1717227.1 activin types I and II receptor domain protein [Ditylenchus destructor]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.965|GO:0065007_0.928|GO:0050789_0.920|GO:0005575_0.912|GO:0009987_0.912|GO:0110165_0.910|GO:0050794_0.904|GO:0050896_0.879|GO:0032501_0.864|GO:0051716_0.850|GO:0023052_0.849|GO:0007154_0.848|GO:0003674_0.846|GO:0016020_0.841|GO:0032502_0.833|GO:0048856_0.833|GO:0007165_0.828|GO:0048518_0.816|GO:0007275_0.799|GO:0048522_0.796|GO:0005488_0.784|GO:0048731_0.783|GO:0005515_0.781|GO:0060089_0.781|GO:0007166_0.776|GO:0010646_0.776|GO:0048583_0.775|GO:0048869_0.774|GO:0030154_0.773|GO:0005622_0.772|GO:0038023_0.772|GO:0023051_0.770|GO:0008152_0.768|GO:0043170_0.767|GO:0019222_0.765|GO:0051239_0.757|GO:0031323_0.755|GO:0044237_0.755|GO:0044238_0.753|GO:0009966_0.750|GO:0048513_0.746|GO:0060255_0.746|GO:0009058_0.739|GO:0080090_0.736|GO:0009059_0.735|GO:0044249_0.735|GO:0009653_0.734|GO:0050793_0.734|GO:0009893_0.733|GO:0010467_0.731|GO:0010647_0.729|GO:0009889_0.728|GO:0010604_0.727|GO:0023056_0.725|GO:0010556_0.723|GO:0031325_0.723|GO:0031326_0.723|GO:0048584_0.723|GO:0010468_0.721|GO:0004888_0.720|GO:0009719_0.720|GO:0051240_0.716|GO:0009888_0.714|GO:0035556_0.714|GO:0009891_0.712|GO:0031328_0.712|GO:0009967_0.711|GO:0003824_0.706|GO:0006139_0.706|GO:0010557_0.706|GO:0045595_0.706|GO:0140096_0.706|GO:0065009_0.705|GO:0034654_0.704|GO:0050790_0.702|GO:0019219_0.701|GO:0048870_0.701|GO:0090304_0.701|GO:0016070_0.700|GO:0016477_0.700|GO:0141187_0.700|GO:0032774_0.699|GO:0051094_0.699|GO:0051252_0.699|GO:0001775_0.698|GO:0006351_0.698|GO:0006355_0.697|GO:0071495_0.697|GO:2001141_0.697|GO:0072359_0.696|GO:0006793_0.693|GO:0006796_0.693|GO:0007167_0.693|GO:0045597_0.692|GO:0070848_0.692|GO:0045935_0.690|GO:0051254_0.689|GO:0071363_0.688|GO:0009887_0.687|GO:1902680_0.686|GO:0045893_0.685|GO:0051174_0.685|GO:0007507_0.684|GO:0016787_0.684|GO:0019220_0.684|GO:0007178_0.683|GO:0016740_0.683|GO:0141091_0.682|GO:0044093_0.681|GO:0043085_0.680|GO:0051336_0.680|GO:0060485_0.679|GO:0090287_0.679|GO:0010562_0.678|GO:0045937_0.678|GO:0090092_0.678|GO:0048762_0.677|GO:0071559_0.677|GO:0071560_0.677|GO:0007179_0.676|GO:0051345_0.676|GO:0003007_0.675|GO:0030509_0.674|GO:0071772_0.674|GO:0071773_0.674|GO:0001837_0.670|GO:0004035_0.670|GO:0010692_0.670|GO:0010694_0.670|GO:0010717_0.670|GO:0010718_0.670|GO:0010921_0.670|GO:0010922_0.670|GO:0016311_0.670|GO:0016788_0.670|GO:0016791_0.670|GO:0030510_0.670|GO:0030513_0.670|GO:0032924_0.670|GO:0035303_0.670|GO:0035306_0.670|GO:0042118_0.670|GO:0042578_0.670|GO:0060317_0.670|GO:0090100_0.670|GO:0019838_0.665|GO:0016772_0.658|GO:0004672_0.656|GO:0016301_0.656|GO:0016773_0.656|GO:0019955_0.655|GO:0004674_0.654|GO:0004675_0.650|GO:0005024_0.650|GO:0005025_0.650|GO:0019199_0.650|GO:0050431_0.650
|
— | — | — | — |
PTHR37433+74-337+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-481
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.620
|
53477.860
|
6.055
|
-5.000
|
21.414
|
13.306
|
45.322
|
54.678
|
11.227
|
10.187
|
52.599
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
yellowgreen
|
348.931
|
121.125
|
192.409
|
123.524
|
670.088
|
990.389
|
260.002
|
212.354
|
312.190
|
328.721
|
321.636
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.437
|
— |
-0.530
|
2.406
|
0.581
|
-1.920
|
-2.333
|
0.436
|
— | — |
2.541
|
— | — |
No JSON data available for plots.