Hg_chrom5_TN10mRNA_9877
Organism: Heterodera glycines Gene Locus: chr5:4889118-4891973 Feature type: polypeptideProtein Sequence
Length: 699
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.115 | 1.164 | 0.858 | 0.641 | 1.025 | 0.99 | 0.732 | 1.288 | 0.827 | 1.257 | 0.52 | 1.178 | 1.629 | 1.293 | 1.401 | 1.022 | 0.797 | 1.062 | 1.321 | 0.421 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9292
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
37-77
|
0.972
|
2-27
|
0.968
|
— | — |
0.000
|
— | — |
0.135
|
0.154
|
0.019
|
0.300
|
0.710
|
0.462
|
0.634
|
0.006
|
0.263
|
0.217
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009522
|
1.000
|
1.000
|
Hsc_gene_20956.t1
|
Hsc_gene_20956.t1
|
— |
P06276.1 Cholinesterase [Homo sapiens]
|
KAF7639098.1 COesterase domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.836|GO:0003674_0.712|GO:0009987_0.697|GO:0005575_0.694|GO:0110165_0.691|GO:0016020_0.532|GO:0003824_0.519
|
IPR002018+112-631+|IPR029058+90-685_109-626+|IPR050309+108-641+
|
— |
PF00135+112-631+Carboxylesterase_family
|
— |
PTHR11559+108-641+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-699
|
5nuu_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.749
|
77667.330
|
6.973
|
5.000
|
23.748
|
11.588
|
44.635
|
55.365
|
12.876
|
10.873
|
53.076
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
204.761
|
182.735
|
124.113
|
62.958
|
474.387
|
1125.562
|
48.976
|
216.169
|
9.321
|
50.751
|
32.995
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.790
|
-1.674
|
-0.868
|
2.881
|
1.262
|
-4.514
|
-2.497
|
-1.996
|
— | — |
3.598
|
— | — |
No JSON data available for plots.