Hg_chrom5_TN10mRNA_9881
Organism: Heterodera glycines Gene Locus: chr5:4906070-4907901 Feature type: polypeptideProtein Sequence
Length: 384
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.454 | 0.848 | 0.994 | 0.629 | 0.738 | 1.202 | 0.868 | 1.823 | 1.273 | 0.915 | 1.065 | 1.838 | 1.808 | 0.801 | 1.648 | 1.6 | 0.854 | 0.552 | 1.002 | 0.689 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9296
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
9-Not_Clustered
|
0.711
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
RKDEGCYTQVGRVRGR,RKGRRTKTTAKIVGRK
|
1-25
|
0.975
|
14-65
|
0.832
|
— |
0.657
|
0.088
|
0.000
|
— |
0.158
|
0.158
|
0.072
|
0.304
|
0.037
|
0.025
|
0.114
|
0.032
|
0.165
|
0.879
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009525
|
1.000
|
1.000
|
Hsc_gene_20952.t1
|
Hsc_gene_20952.t1;Hsc_gene_20952.t2
|
— |
P91828.2 Zinc metalloproteinase nas-5 [Caenorhabditis elegans]
|
QIE06434.1 astacin-like metalloendopeptidase, partial [Radopholus similis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.759|GO:0005575_0.655|GO:0110165_0.652|GO:0003674_0.567|GO:0032501_0.512
|
IPR001506+108-329_129-319_146-164_216-234_235-252_274-289+|IPR006026+114-279+|IPR024079+58-322+|IPR034035+127-321+
|
SM00235+114-279+
|
PF01400+129-319+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+94-320+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
291-384
|
1.000
|
1-290
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.849
|
43934.960
|
10.295
|
27.000
|
28.646
|
13.802
|
53.385
|
46.615
|
18.750
|
9.896
|
46.354
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
759.618
|
9.118
|
174.114
|
466.697
|
167.751
|
28.378
|
65.387
|
455.255
|
1132.141
|
1961.709
|
1606.180
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.033
|
5.542
|
1.527
|
-1.508
|
-2.548
|
1.215
|
3.903
|
-2.659
|
— | — |
-3.446
|
— | — |