Hg_chrom5_TN10mRNA_9883
Organism: Heterodera glycines Gene Locus: chr5:4911423-4912653 Feature type: polypeptideProtein Sequence
Length: 233
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.848 | 0.798 | 1.014 | 0.148 | 0.787 | 1.1 | 0.869 | 1.931 | 1.049 | 1.392 | 0.715 | 1.767 | 1.073 | 0.743 | 1.664 | 0.92 | 1.055 | 1.366 | 0.66 | 0.505 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9297
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
RKRRR
|
7-47
|
0.760
|
— | — | — | — |
0.000
|
— | — |
0.220
|
0.089
|
0.013
|
0.402
|
0.262
|
0.427
|
0.089
|
0.036
|
0.349
|
0.514
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002211
|
3.000
|
1.000
|
Hsc_gene_3713.t1
|
Hsc_gene_19286.t1;Hsc_gene_3713.t1
|
— |
Q09466.1 ABC transporter ATP-binding protein/permease wht-3 [Caenorhabditis elegans]
|
KAI1713968.1 ABC-2 type transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016887
|
GO:0008150_0.839|GO:0005575_0.763|GO:0110165_0.757|GO:0016020_0.657|GO:0009987_0.623|GO:0005622_0.532|GO:0003674_0.522
|
IPR003439+50-176+|IPR027417+31-226_32-217+|IPR050352+30-225+
|
— |
PF00005+50-176+ABC_transporter
|
— |
PTHR48041+30-225+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-233
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.805
|
26028.910
|
10.120
|
10.500
|
27.039
|
10.300
|
47.639
|
52.361
|
16.738
|
10.300
|
49.785
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
cyan
|
575.775
|
197.262
|
351.217
|
553.989
|
1277.700
|
1107.274
|
1809.479
|
466.433
|
1.382
|
356.720
|
204.432
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.599
|
1.352
|
0.769
|
1.175
|
— |
0.720
|
-1.360
|
2.102
|
— |
8.981
|
— | — | — |
No JSON data available for plots.