Hg_chrom5_TN10mRNA_9886
Organism: Heterodera glycines Gene Locus: chr5:4921517-4924004 Feature type: polypeptideProtein Sequence
Length: 632
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.865 | 0.92 | 1.266 | 0.382 | 1.292 | 1.501 | 0.659 | 1.345 | 1.266 | 1.454 | 1.223 | 1.955 | 0.879 | 0.609 | 1.195 | 0.701 | 0.648 | 0.887 | 0.852 | 0.838 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9300
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.979
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKQRDKAKKEKEKAAAKQKQTG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.269
|
0.129
|
0.012
|
0.641
|
0.163
|
0.259
|
0.264
|
0.011
|
0.185
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009528
|
1.000
|
1.000
|
Hsc_gene_20950.t1
|
Hsc_gene_20950.t1
|
— |
Q2KJA2.1 ATP-binding cassette sub-family F member 2 [Bos taurus]
|
KAI1727030.1 ABC transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016887
|
GO:0005575_0.797|GO:0110165_0.786|GO:0005622_0.683|GO:0005737_0.563|GO:0008150_0.556|GO:0016020_0.503
|
IPR003439+95-336_111-268_407-624_425-556+|IPR003593+119-320_433-601+|IPR017871+240-254+|IPR027417+87-347_91-360_370-631_391-605+|IPR032781+307-384+|IPR050611+7-621+
|
SM00382+119-320_433-601+
|
PF00005+111-268_425-556+ABC_transporter|PF12848+307-384+ABC_transporter
|
G3DSA:3.40.50.300:FF:000104+367-624+ATP-binding_cassette_sub-family_F_member_3|G3DSA:3.40.50.300:FF:000683+95-360+Abc_transporter_f_family_member_1
|
PTHR19211+7-621+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-69;626-632
|
1.000
|
70-625
|
8z71_v
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.526
|
72253.820
|
6.854
|
3.500
|
31.329
|
9.810
|
50.000
|
50.000
|
16.614
|
14.715
|
42.880
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
3457.957
|
2370.891
|
2003.899
|
4388.794
|
5163.472
|
4210.700
|
3011.281
|
2365.274
|
5832.948
|
1935.984
|
3606.112
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.472
|
0.751
|
1.239
|
0.203
|
-0.279
|
-0.473
|
-0.935
|
0.491
|
— | — | — | — | — |
No JSON data available for plots.