Hg_chrom5_TN10mRNA_9889
Organism: Heterodera glycines Gene Locus: chr5:4930988-4932614 Feature type: polypeptideProtein Sequence
Length: 190
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.551 | 0.979 | 1.531 | 0.363 | 1.14 | 1.35 | 0.815 | 0.526 | 1.52 | 1.067 | 1.435 | 1.238 | 1.754 | 0.405 | 1.182 | 0.827 | 0.949 | 0.718 | 1.215 | 0.929 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9303
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.261
|
0.253
|
0.029
|
0.446
|
0.218
|
0.410
|
0.379
|
0.013
|
0.752
|
0.198
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009530
|
1.000
|
1.000
|
Hsc_gene_20946.t1
|
Hsc_gene_20946.t1
|
— |
P36608.2 Neuronal calcium sensor 1 [Caenorhabditis elegans]
|
KAI1723592.1 EF-hand domain pair domain-containing protein [Ditylenchus destructor]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0008150_0.789|GO:0005575_0.755|GO:0110165_0.755|GO:0009987_0.629|GO:0003674_0.621|GO:0005622_0.606|GO:0016020_0.544|GO:0005488_0.542|GO:0005737_0.538|GO:0065007_0.517|GO:0050789_0.503
|
IPR002048+60-95_64-92_67-120_96-131_98-171_100-128+|IPR011992+1-186+|IPR028846+4-183+
|
SM00054+64-92_100-128+
|
PF13499+98-171+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000009+1-188+Visinin-like_protein_1
|
PTHR23055+4-183+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-190
|
9gu6_H
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.579
|
21966.940
|
7.137
|
1.000
|
31.579
|
12.105
|
52.632
|
47.368
|
16.316
|
15.263
|
43.684
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
238.639
|
766.387
|
402.671
|
156.665
|
40.536
|
46.567
|
38.305
|
231.151
|
64.865
|
364.540
|
236.108
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.159
|
-2.428
|
-1.252
|
-1.987
|
— | — |
2.211
|
-2.451
|
— | — | — | — | — |
No JSON data available for plots.