SCN Proteipedia

Hg_chrom5_TN10mRNA_9890

Organism: Heterodera glycines Gene Locus: chr5:4933542-4937186 Feature type: polypeptide

Protein Sequence

Length: 459

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.659	1.115	0.753	0.601	1.489	0.782	0.597	1.852	0.823	1.531	1.287	1.153	1.755	1.089	1.023	0.591	0.929	1.023	0.67	0.897	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9304	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-Not_Clustered	0.682

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm	—	KRRK,KKKFLVPEQKLMEKRKNW	—	—	—	—	—	—	0.000	—	—	0.460	0.237	0.038	0.673	0.160	0.426	0.211	0.003	0.339	0.050

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009531	1.000	1.000	Hsc_gene_20945.t1	Hsc_gene_20945.t1	—	Q2PJ68.1 Serine/threonine-protein kinase sgk-1 [Caenorhabditis elegans]	KAI1729789.1 protein kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0005524\|GO:0006468	GO:0008150_0.983\|GO:0009987_0.894\|GO:0065007_0.869\|GO:0050789_0.863\|GO:0003674_0.853\|GO:0003824_0.853\|GO:0016740_0.853\|GO:0016772_0.850\|GO:0004672_0.848\|GO:0016301_0.848\|GO:0016773_0.848\|GO:0140096_0.848\|GO:0050896_0.828\|GO:0005575_0.825\|GO:0110165_0.823\|GO:0050794_0.818\|GO:0005622_0.772\|GO:0004674_0.727\|GO:0051716_0.722\|GO:0005737_0.663\|GO:0071840_0.639\|GO:0048518_0.638\|GO:0016043_0.613\|GO:0008152_0.610\|GO:0007154_0.602\|GO:0023052_0.599\|GO:0007165_0.597\|GO:0044238_0.585\|GO:0005488_0.579\|GO:0016020_0.575\|GO:0044237_0.572\|GO:0043170_0.560\|GO:0006793_0.535\|GO:0006796_0.535\|GO:0048522_0.532\|GO:0043412_0.530\|GO:0019538_0.527\|GO:0032879_0.527\|GO:0036211_0.527\|GO:0051179_0.527	IPR000719+131-388_133-388+\|IPR000961+389-452_389-459+\|IPR008271+251-263+\|IPR011009+130-446+\|IPR017441+137-160+	SM00133+389-452+\|SM00220+131-388+	PF00069+133-388+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000008+215-419+Non-specific_serine/threonine_protein_kinase\|G3DSA:3.30.200.20:FF:000537+129-229+Non-specific_serine/threonine_protein_kinase	PTHR24351+89-454+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-459	1gzo_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.635	52877.930	7.938	10.500	30.283	13.943	47.930	52.070	17.211	13.072	43.573

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	grey	1143.121	142.012	270.514	1107.098	1153.042	972.229	1581.986	663.355	73.410	2737.259	1595.609

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.701	2.825	2.142	—	—	0.713	-0.652	1.395	-5.331	4.104	—	—	—

No JSON data available for plots.

Back to Browser