SCN Proteipedia

Hg_chrom5_TN10mRNA_9891

Organism: Heterodera glycines Gene Locus: chr5:4938162-4940536 Feature type: polypeptide

Protein Sequence

Length: 414

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.674	1.404	1.01	0.833	1.167	1.177	0.575	0.483	0.751	1.338	0.842	0.853	1.677	1.579	0.937	1.932	0.673	0.549	0.186	0.639	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9305	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Not_Clustered	0.944

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	8-79	0.986	—	—	0.000	—	—	0.979	0.055	0.051	0.227	0.028	0.036	0.016	0.005	0.030	0.008

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009532	1.000	1.000	Hsc_gene_20944.t1	Hsc_gene_20944.t1	—	O00716.1 Transcription factor E2F3 [Homo sapiens]	KAF7639093.1 E2F_TDP domain-containing protein [Meloidogyne graminicola]	No	-0.080

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0000978\|GO:0005667\|GO:0006355\|GO:0006357\|GO:0046983	GO:0008150_0.910\|GO:0005575_0.877\|GO:0110165_0.877\|GO:0009987_0.863\|GO:0065007_0.862\|GO:0050789_0.860\|GO:0005622_0.845\|GO:0050794_0.845\|GO:0003674_0.787\|GO:0005488_0.782\|GO:0016020_0.777\|GO:0043226_0.776\|GO:0043229_0.740\|GO:0043227_0.733\|GO:0008152_0.704\|GO:0019222_0.704\|GO:0043170_0.701\|GO:0044238_0.694\|GO:0080090_0.694\|GO:0060255_0.691\|GO:0043231_0.685\|GO:0031323_0.675\|GO:0044237_0.675\|GO:0009058_0.674\|GO:0009059_0.674\|GO:0044249_0.674\|GO:0097159_0.667\|GO:0006139_0.664\|GO:0003676_0.662\|GO:0034654_0.662\|GO:0010467_0.661\|GO:0090304_0.659\|GO:0009889_0.657\|GO:0031326_0.657\|GO:0010468_0.654\|GO:0010556_0.654\|GO:0003677_0.649\|GO:0019219_0.648\|GO:0141187_0.647\|GO:0016070_0.637\|GO:0032774_0.630\|GO:0006351_0.628\|GO:0051252_0.624\|GO:0006355_0.622\|GO:2001141_0.622\|GO:0048518_0.605\|GO:0005634_0.597\|GO:0048522_0.594\|GO:0043565_0.571\|GO:0000976_0.515\|GO:0001067_0.515\|GO:0003690_0.515\|GO:1990837_0.515	IPR003316+104-167_106-166+\|IPR015633+49-302+\|IPR032198+181-279+\|IPR036388+99-168+\|IPR036390+104-165+\|IPR037241+176-281+	SM01372+104-167+	PF02319+106-166+E2F/DP_family_winged-helix_DNA-binding_domain\|PF16421+181-279+E2F_transcription_factor_CC-MB_domain	G3DSA:1.10.10.10:FF:000458+99-168+E2F-like_(Mammalian_transcription_factor)	PTHR12081+49-302+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-59	1.000	60-414	1cf7_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.852	45768.190	4.900	-8.000	23.671	9.420	51.932	48.068	11.111	12.560	54.106

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	steelblue	1248.040	1093.397	1084.230	1094.747	1078.845	1048.486	1836.209	1427.426	871.246	1557.988	1263.670

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.243	-0.135	0.124	—	—	0.819	0.339	0.506	—	—	—	—	—

No JSON data available for plots.

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