Hg_chrom5_TN10mRNA_9893
Organism: Heterodera glycines Gene Locus: chr5:4947017-4960518 Feature type: polypeptideProtein Sequence
Length: 2,757
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.654 | 1.105 | 0.91 | 0.926 | 0.973 | 1.2 | 0.449 | 1.578 | 1.153 | 1.696 | 0.605 | 1.067 | 1.924 | 0.83 | 1.125 | 1.508 | 0.838 | 0.813 | 0.977 | 0.555 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9307
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.362
|
0.149
|
0.012
|
0.566
|
0.158
|
0.618
|
0.336
|
0.036
|
0.134
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002213
|
1.000
|
3.000
|
Hsc_gene_20942.t1;Hsc_gene_20942.t2;Hsc_gene_20942.t3
|
Hsc_gene_20941.t1;Hsc_gene_20942.t1;Hsc_gene_20942.t2;Hsc_gene_20942.t3
|
— |
Q9TTK4.1 Lysosomal-trafficking regulator [Bos taurus]
|
KAI1726005.1 beige/BEACH domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.892|GO:0005575_0.832|GO:0110165_0.831|GO:0009987_0.830|GO:0005622_0.746|GO:0016020_0.603|GO:0005737_0.600|GO:0043226_0.559|GO:0050896_0.549|GO:0043229_0.535|GO:0051179_0.506
|
IPR000409+2020-2335_2032-2332_2032-2335_2033-2333+|IPR001680+2537-2576_2544-2585_2681-2721+|IPR011993+1914-2011+|IPR015943+2500-2743+|IPR023362+1911-2013_1927-2009+|IPR036322+2495-2724+|IPR036372+2013-2333_2023-2335+|IPR050865+28-2710+
|
SM00320+2537-2576_2681-2721+|SM01026+2032-2335+
|
PF02138+2033-2333+Beige/BEACH_domain|PF14844+1927-2009+PH_domain_associated_with_Beige/BEACH
|
— |
PTHR13743+28-2710+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
228-273
|
2.000
|
1-227;274-2757
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.649
|
313350.110
|
6.623
|
6.500
|
23.504
|
13.239
|
48.604
|
51.396
|
12.659
|
10.845
|
47.189
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkturquoise
|
2289.918
|
3965.165
|
2557.928
|
1911.470
|
1707.467
|
1838.493
|
3855.588
|
2258.926
|
2515.811
|
1345.892
|
1847.286
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.862
|
-1.190
|
-0.311
|
-0.194
|
— |
1.078
|
— |
0.913
|
— | — | — | — | — |
No JSON data available for plots.