Hg_chrom5_TN10mRNA_9894
Organism: Heterodera glycines Gene Locus: chr5:4960739-4963387 Feature type: polypeptideProtein Sequence
Length: 529
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.901 | 0.528 | 0.791 | 0.782 | 1.67 | 1.406 | 0.63 | 1.701 | 1.26 | 1.558 | 0.687 | 1.112 | 0.998 | 0.763 | 1.697 | 1.08 | 0.713 | 0.687 | 0.436 | 0.778 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9308
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.281
|
0.294
|
0.063
|
0.717
|
0.148
|
0.337
|
0.272
|
0.078
|
0.204
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002214
|
1.000
|
3.000
|
Hsc_gene_20940.t1;Hsc_gene_20940.t2;Hsc_gene_20940.t3
|
Hsc_gene_20940.t1;Hsc_gene_20940.t2;Hsc_gene_20940.t3
|
— |
A8X3V8.1 Tyrosine 3-monooxygenase [Caenorhabditis briggsae]
|
KAH7702970.1 Protein CAT-2 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004497|GO:0005506|GO:0009072|GO:0016714
|
GO:0008150_0.833|GO:0009987_0.746|GO:0003674_0.709|GO:0005575_0.700|GO:0110165_0.695|GO:0008152_0.643|GO:0009058_0.618|GO:0003824_0.580|GO:0005622_0.530|GO:0044238_0.505|GO:0016491_0.503
|
IPR001273+76-514+|IPR018301+340-351+|IPR019774+165-511_178-506_206-225_297-319_361-380_401-419_432-451+|IPR036329+178-510+|IPR036951+67-511+
|
— |
PF00351+178-506+Biopterin-dependent_aromatic_amino_acid_hydroxylase
|
— |
PTHR11473+76-514+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;519-529
|
1.000
|
2-518
|
1toh_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.520
|
60235.600
|
6.593
|
1.000
|
30.624
|
10.208
|
50.284
|
49.716
|
16.257
|
14.367
|
42.344
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
226.354
|
330.452
|
771.253
|
325.117
|
156.812
|
108.784
|
272.396
|
383.005
|
51.112
|
71.533
|
62.781
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.994
|
-0.161
|
-1.137
|
-1.083
|
-0.514
|
1.337
|
1.713
|
— | — | — | — | — | — |
No JSON data available for plots.