Hg_chrom5_TN10mRNA_9895
Organism: Heterodera glycines Gene Locus: chr5:4964534-4965394 Feature type: polypeptideProtein Sequence
Length: 208
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.615 | 1.342 | 0.787 | 0.995 | 1.362 | 1.479 | 0.572 | 1.202 | 1.816 | 1.429 | 0.947 | 1.414 | 2.003 | 0.462 | 0.883 | 0.893 | 0.394 | 1.238 | 0.0 | 0.707 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9309
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.180
|
0.128
|
0.105
|
0.559
|
0.216
|
0.526
|
0.622
|
0.085
|
0.117
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009534
|
1.000
|
1.000
|
Hsc_gene_20939.t1
|
Hsc_gene_20939.t1
|
— |
Q2YDH6.1 AP-3 complex subunit sigma-1 [Bos taurus]
|
KAH7701719.1 CBN-APS-3 protein [Aphelenchus avenae];KAH7728647.1 CBN-APS-3 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006886|GO:0006896|GO:0015031|GO:0016192|GO:0030117|GO:0030123
|
GO:0005575_0.913|GO:0110165_0.912|GO:0005622_0.851|GO:0016020_0.786|GO:0005737_0.776|GO:0008150_0.731|GO:0043226_0.706|GO:0043229_0.693|GO:0009987_0.676|GO:0043227_0.661|GO:0043231_0.649|GO:0071944_0.584|GO:0005886_0.560|GO:0051179_0.512
|
IPR000804+63-73+|IPR011012+1-162+|IPR016635+2-161+|IPR022775+1-162+|IPR027155+1-161+
|
— |
PF01217+1-162+Clathrin_adaptor_complex_small_chain
|
G3DSA:3.30.450.60:FF:000001+1-172+AP_complex_subunit_sigma
|
PTHR11753+2-161+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-208
|
9c5b_S
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.546
|
23785.550
|
6.012
|
-1.500
|
25.481
|
12.019
|
45.673
|
54.327
|
12.981
|
12.500
|
42.308
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
468.232
|
587.629
|
888.256
|
720.126
|
705.602
|
635.150
|
684.796
|
753.423
|
142.166
|
76.273
|
104.513
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.367
|
0.157
|
-0.194
|
— | — | — | — | — | — | — |
3.237
|
— | — |
No JSON data available for plots.