Hg_chrom5_TN10mRNA_9898
Organism: Heterodera glycines Gene Locus: chr5:4974924-4980401 Feature type: polypeptideProtein Sequence
Length: 1,251
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.125 | 0.837 | 0.887 | 0.689 | 0.919 | 1.066 | 0.742 | 1.519 | 0.924 | 1.404 | 0.799 | 1.176 | 1.332 | 1.015 | 1.338 | 1.485 | 0.852 | 0.606 | 1.107 | 0.423 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9312
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — |
48-108
|
0.988
|
— | — | — | — |
0.000
|
— | — |
0.385
|
0.201
|
0.029
|
0.575
|
0.176
|
0.287
|
0.253
|
0.107
|
0.381
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009537
|
1.000
|
1.000
|
Hsc_gene_20935.t1
|
Hsc_gene_20935.t1;Hsc_gene_20936.t1;Hsc_gene_20936.t2
|
— | — |
KAH7693878.1 ankyrin repeat and BTB/POZ domain-containing protein 2-like protein, partial [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0046982
|
GO:0008150_0.790|GO:0005575_0.788|GO:0110165_0.781|GO:0009987_0.745|GO:0003674_0.701|GO:0005488_0.635|GO:0032501_0.624|GO:0005515_0.594|GO:0065007_0.520|GO:0050789_0.505
|
IPR000210+1066-1163_1070-1126_1070-1171+|IPR009072+436-593+|IPR011333+1059-1161_1060-1202+|IPR036770+740-981_761-936+|IPR052089+1059-1209+
|
SM00225+1070-1171+
|
PF00651+1066-1163+BTB/POZ_domain
|
— |
PTHR46071+1059-1209+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;140-188;248-410;1223-1251
|
3.000
|
2-139;189-247;411-1222
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.858
|
138104.890
|
8.744
|
37.000
|
25.260
|
10.711
|
48.601
|
51.399
|
14.868
|
10.392
|
51.239
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1321.403
|
1807.521
|
2190.138
|
1594.988
|
1409.341
|
1309.660
|
952.577
|
1502.976
|
1067.656
|
942.695
|
996.250
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.318
|
-0.349
|
-0.210
|
— |
-0.449
|
— |
-0.514
|
— | — | — | — | — |
No JSON data available for plots.