Hg_chrom5_TN10mRNA_9899
Organism: Heterodera glycines Gene Locus: chr5:4982838-4989469 Feature type: polypeptideProtein Sequence
Length: 1,198
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.883 | 0.971 | 0.941 | 0.317 | 1.169 | 2.376 | 1.063 | 2.087 | 0.427 | 0.541 | 0.683 | 1.62 | 1.391 | 1.91 | 1.158 | 1.395 | 0.739 | 0.43 | 0.385 | 0.393 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9313
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
PTPKRHR,RRNSFGRFSEKRNFR,KKETEENANSTEKAKKE,KKEAATGDPRKDPRRKGRA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.833
|
0.069
|
0.005
|
0.558
|
0.055
|
0.018
|
0.025
|
0.014
|
0.047
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009538
|
1.000
|
1.000
|
Hsc_gene_20934.t1
|
Hsc_gene_20934.t1
|
— |
Q9UPT8.3 Zinc finger CCCH domain-containing protein 4 [Homo sapiens]
|
KAI6212132.1 Arachidonate--CoA ligase [Aphelenchoides besseyi]
|
No
|
-0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0045892|GO:0046872
|
GO:0008150_0.967|GO:0065007_0.945|GO:0005575_0.936|GO:0050789_0.936|GO:0110165_0.931|GO:0009987_0.930|GO:0050794_0.930|GO:0003674_0.893|GO:0005622_0.886|GO:0005488_0.885|GO:0008152_0.872|GO:0019222_0.872|GO:0031323_0.872|GO:0044237_0.872|GO:0044238_0.868|GO:0080090_0.868|GO:0043170_0.860|GO:0009058_0.856|GO:0009059_0.856|GO:0010467_0.856|GO:0044249_0.856|GO:0060255_0.856|GO:0043226_0.851|GO:0009889_0.849|GO:0010556_0.849|GO:0031326_0.849|GO:0016020_0.847|GO:0006139_0.845|GO:0010468_0.845|GO:0016070_0.845|GO:0090304_0.845|GO:0034654_0.840|GO:0141187_0.840|GO:0032774_0.839|GO:0019219_0.833|GO:0051252_0.833|GO:0043229_0.830|GO:0048519_0.811|GO:0006351_0.809|GO:0048523_0.809|GO:0006355_0.802|GO:2001141_0.802|GO:0005634_0.796|GO:0043227_0.796|GO:0043231_0.796|GO:0009892_0.760|GO:0010605_0.757|GO:0031324_0.756|GO:0045934_0.741|GO:0051253_0.741|GO:0009890_0.739|GO:0010558_0.739|GO:0031327_0.739|GO:0045892_0.731|GO:1902679_0.731|GO:0003676_0.609|GO:0097159_0.609|GO:0009056_0.501|GO:0009057_0.501
|
IPR000571+392-419_393-418_394-416_422-448_423-449_450-470_450-471+|IPR036855+395-417_449-489+|IPR045124+11-812+|IPR054361+449-483+
|
SM00356+393-418_422-448_450-470+
|
PF00642+394-416+Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)|PF14608+427-447+RNA-binding,_Nab2-type_zinc_finger|PF22623+449-483+KIAA1064-like,_CCCH_zinc_finger
|
— |
PTHR13119+11-812+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-381;475-1198
|
1.000
|
382-474
|
2cqe_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.873
|
131530.950
|
6.542
|
1.000
|
26.544
|
11.018
|
54.257
|
45.743
|
14.357
|
12.187
|
53.840
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
1315.651
|
2356.035
|
1412.034
|
1294.710
|
1542.657
|
1240.956
|
3163.438
|
1164.982
|
754.606
|
624.464
|
680.239
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.968
|
-1.001
|
— |
0.222
|
-0.300
|
1.361
|
— |
1.585
|
— | — |
2.342
|
— | — |
No JSON data available for plots.