Hg_chrom5_TN10mRNA_9901
Organism: Heterodera glycines Gene Locus: chr5:4998683-5000588 Feature type: polypeptideProtein Sequence
Length: 330
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.634 | 1.339 | 0.551 | 0.313 | 1.061 | 1.321 | 0.469 | 1.212 | 1.414 | 1.229 | 0.735 | 1.248 | 2.862 | 0.758 | 1.051 | 1.212 | 0.845 | 1.01 | 2.564 | 0.446 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9315
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RKWSMEQNFSIVLGRKIER
|
28-54
|
0.989
|
— | — | — | — |
0.000
|
— | — |
0.194
|
0.110
|
0.009
|
0.233
|
0.894
|
0.265
|
0.386
|
0.031
|
0.245
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009540
|
1.000
|
1.000
|
Hsc_gene_20932.t1
|
Hsc_gene_20932.t1
|
— |
F7B645.1 Transmembrane protein 231 [Xenopus tropicalis]
|
KAI1732891.1 transmembrane protein [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.941|GO:0005575_0.913|GO:0110165_0.908|GO:0009987_0.884|GO:0016020_0.866|GO:0005622_0.809|GO:0071944_0.799|GO:0065007_0.797|GO:0043226_0.789|GO:0005886_0.782|GO:0050789_0.775|GO:0050896_0.772|GO:0043227_0.771|GO:0051179_0.770|GO:0006810_0.765|GO:0051234_0.765|GO:0050794_0.753|GO:0051716_0.743|GO:0032501_0.737|GO:0071840_0.728|GO:0032502_0.722|GO:0048856_0.722|GO:0016043_0.721|GO:0023052_0.712|GO:0007154_0.711|GO:0007275_0.706|GO:0051641_0.706|GO:0007165_0.705|GO:0048731_0.700|GO:0006996_0.695|GO:0030154_0.695|GO:0048869_0.695|GO:0051649_0.693|GO:0032879_0.692|GO:0033036_0.689|GO:0008104_0.686|GO:0044085_0.686|GO:0070727_0.686|GO:0016192_0.684|GO:0046907_0.684|GO:0048513_0.683|GO:0007166_0.682|GO:0009653_0.682|GO:0022607_0.682|GO:0060341_0.679|GO:0009888_0.678|GO:0032880_0.678|GO:0030030_0.677|GO:0048193_0.677|GO:0120036_0.677|GO:0033365_0.676|GO:0007010_0.675|GO:0009790_0.675|GO:0051640_0.675|GO:0007017_0.674|GO:0007018_0.674|GO:0051656_0.674|GO:0060429_0.674|GO:0070925_0.674|GO:0000226_0.670|GO:0001578_0.670|GO:0001654_0.670|GO:0001701_0.670|GO:0001944_0.670|GO:0002065_0.670|GO:0005929_0.670|GO:0006903_0.670|GO:0007224_0.670|GO:0007423_0.670|GO:0009792_0.670|GO:0010970_0.670|GO:0030031_0.670|GO:0030326_0.670|GO:0030705_0.670|GO:0030855_0.670|GO:0030990_0.670|GO:0031503_0.670|GO:0032991_0.670|GO:0035082_0.670|GO:0035107_0.670|GO:0035108_0.670|GO:0035113_0.670|GO:0035735_0.670|GO:0042073_0.670|GO:0042733_0.670|GO:0042995_0.670|GO:0043009_0.670|GO:0043010_0.670|GO:0044782_0.670|GO:0048199_0.670|GO:0048598_0.670|GO:0048736_0.670|GO:0048880_0.670|GO:0051648_0.670|GO:0051650_0.670|GO:0060173_0.670|GO:0060271_0.670|GO:0060563_0.670|GO:0061512_0.670|GO:0072359_0.670|GO:0097712_0.670|GO:0098590_0.670|GO:0099111_0.670|GO:0120025_0.670|GO:0120031_0.670|GO:0150063_0.670|GO:1905349_0.670|GO:0031090_0.634|GO:0098588_0.584|GO:0031253_0.540|GO:0035869_0.540|GO:0036038_0.540|GO:0060170_0.540
|
IPR019306+4-321_5-322+
|
— |
PF10149+4-321+Transmembrane_protein_231
|
— |
PTHR14605+5-322+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-330
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.729
|
38518.250
|
8.289
|
6.000
|
21.818
|
17.576
|
46.364
|
53.636
|
12.424
|
9.394
|
43.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
1348.291
|
572.446
|
271.003
|
122.010
|
46.232
|
43.012
|
59.761
|
145.568
|
56.139
|
5384.155
|
3100.720
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.308
|
-2.368
|
-1.044
|
-1.434
|
— | — |
1.661
|
-1.151
|
-6.705
|
— |
-6.324
|
— | — |
No JSON data available for plots.