Hg_chrom5_TN10mRNA_9902
Organism: Heterodera glycines Gene Locus: chr5:5000526-5005503 Feature type: polypeptideProtein Sequence
Length: 819
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.781 | 0.937 | 0.511 | 0.716 | 1.038 | 0.877 | 0.698 | 1.282 | 1.058 | 1.568 | 0.87 | 1.149 | 1.967 | 0.869 | 0.897 | 1.971 | 0.741 | 0.796 | 0.939 | 0.431 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9316
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RHRR,RMDKRPR,KSRKKVKSPKGRTKG,RRELNINGKVNRRVRT,KRKKEEEEEQQKGKKEEKK,KKEEEEEQQKGKKEEKKER
|
— | — | — | — | — | — |
0.000
|
— | — |
0.253
|
0.084
|
0.012
|
0.236
|
0.339
|
0.438
|
0.247
|
0.035
|
0.441
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009541
|
1.000
|
1.000
|
Hsc_gene_20931.t1
|
Hsc_gene_20931.t1
|
— | — |
KAI6221167.1 Sodium-dependent glucose transporter 1 [Aphelenchoides besseyi]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
311-444;785-819
|
2.000
|
1-310;445-784
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.898
|
90586.780
|
8.437
|
19.500
|
21.734
|
12.332
|
47.497
|
52.503
|
12.698
|
9.035
|
49.573
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellow
|
1380.117
|
1593.891
|
1389.097
|
1208.600
|
1241.642
|
1254.672
|
1463.710
|
1387.553
|
1903.012
|
1033.565
|
1406.185
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.429
|
-0.536
|
— | — | — |
0.230
|
— | — | — | — | — | — | — |
No JSON data available for plots.