Hg_chrom5_TN10mRNA_9904
Organism: Heterodera glycines Gene Locus: chr5:5008421-5009878 Feature type: polypeptideProtein Sequence
Length: 385
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.785 | 0.846 | 1.039 | 0.179 | 1.039 | 0.932 | 0.433 | 1.818 | 1.616 | 1.65 | 0.945 | 0.611 | 1.227 | 1.099 | 1.113 | 1.707 | 0.894 | 0.787 | 0.2 | 0.306 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9318
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RRHFEPDETTKKPKL
|
7-33
|
0.875
|
1-32
|
0.998
|
— | — |
0.000
|
— | — |
0.208
|
0.904
|
0.027
|
0.319
|
0.024
|
0.025
|
0.028
|
0.010
|
0.040
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003614
|
2.000
|
1.000
|
Hsc_gene_5869.t1
|
— | — |
O59816.1 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [Schizosaccharomyces pombe 972h-]
|
KAI1732910.1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006086|GO:0016746|GO:0045254
|
GO:0005575_0.882|GO:0110165_0.840|GO:0005622_0.816|GO:0016020_0.748|GO:0005737_0.733|GO:0043226_0.712|GO:0008150_0.704|GO:0043229_0.689|GO:0043227_0.678|GO:0009987_0.655|GO:0043231_0.649|GO:0008152_0.545|GO:0003674_0.534|GO:0044237_0.524
|
IPR001078+120-344+|IPR023213+106-348+|IPR036625+25-70+|IPR045257+29-344+
|
— |
PF00198+120-344+2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)
|
— |
PTHR23151+29-344+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-385
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
42769.830
|
7.394
|
6.000
|
27.273
|
9.351
|
51.948
|
48.052
|
15.325
|
11.948
|
48.571
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1180.067
|
939.040
|
936.448
|
1316.451
|
1934.971
|
1297.036
|
1146.439
|
942.646
|
511.000
|
1587.156
|
1125.946
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.234
|
0.350
|
0.601
|
0.524
|
-0.562
|
-0.169
|
-0.566
|
0.424
|
— | — | — | — | — |
No JSON data available for plots.