Hg_chrom5_TN10mRNA_9905
Organism: Heterodera glycines Gene Locus: chr5:5010389-5013392 Feature type: polypeptideProtein Sequence
Length: 573
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.954 | 1.055 | 0.444 | 0.782 | 0.582 | 0.716 | 0.935 | 1.222 | 1.668 | 1.533 | 0.37 | 1.745 | 1.697 | 0.772 | 0.712 | 1.471 | 0.801 | 1.322 | 1.477 | 0.667 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9319
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — |
46-66
|
0.873
|
— | — |
0.001
|
— | — |
0.097
|
0.106
|
0.022
|
0.117
|
0.330
|
0.444
|
0.317
|
0.169
|
0.723
|
0.140
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009543
|
1.000
|
1.000
|
Hsc_gene_20929.t1
|
Hsc_gene_20929.t1
|
— |
Q9V7S5.1 Putative inorganic phosphate cotransporter [Drosophila melanogaster]
|
KAI6175294.1 MFS domain-containing protein [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.957|GO:0009987_0.875|GO:0005575_0.835|GO:0110165_0.828|GO:0003674_0.781|GO:0051179_0.774|GO:0051234_0.774|GO:0006810_0.773|GO:0055085_0.752|GO:0016020_0.720|GO:0005215_0.715|GO:0022857_0.715|GO:0071944_0.661|GO:0005886_0.646|GO:0005622_0.519|GO:0005737_0.515
|
IPR011701+70-498+|IPR020846+65-539+|IPR036259+51-536_57-313_343-539+|IPR050382+64-545+
|
— |
PF07690+70-498+Major_Facilitator_Superfamily
|
G3DSA:1.20.1250.20:FF:000532+142-533+SLC_(SoLute_Carrier)_homolog
|
PTHR11662+64-545+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-42
|
1.000
|
43-573
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.823
|
62246.540
|
7.425
|
7.000
|
14.311
|
12.740
|
36.824
|
63.176
|
8.377
|
5.934
|
53.229
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
1334.869
|
3494.950
|
2207.154
|
1596.958
|
1178.623
|
988.903
|
1233.063
|
1964.380
|
520.881
|
700.380
|
623.452
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.893
|
-1.267
|
-0.358
|
-0.470
|
-0.239
|
0.327
|
0.885
|
-0.531
|
— | — | — | — | — |
No JSON data available for plots.